Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq394 159 8e-34 seq806 123 6e-23 seq793 89.7 1e-12 >seq394 Length=505719 Score = 159 bits (176), Expect = 8e-34 Identities = 174/230 (76%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| |||||||||| || ||| |||||||| || |||||| | Sbjct 8520 CCACCGCGCAGACGAAGGACGAGATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGCTG 8579 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || |||||||| ||||| || || |||||| Sbjct 8580 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGG---TCTGGG 8636 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || || ||||| || || || |||||||| || | ||||| ||| Sbjct 8637 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCGCTGCCTTCG 8696 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || |||||||| ||||| || ||||||||||| || ||||| Sbjct 8697 ACTTCGAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 8746 Score = 150 bits (166), Expect = 4e-31 Identities = 176/235 (75%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| | ||| | || | || | ||| ||| || ||||| || |||| Sbjct 9428 CATG-CCACCGCGCAATCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGT 9486 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | ||||| || || || | || || || |||||||| ||||| || ||| | Sbjct 9487 CGGACAAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGA---T 9543 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || ||||| ||||||||||| || || || ||||| || |||| ||||| Sbjct 9544 CTGGGGGGATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCGCTGC 9603 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| |||||||| ||||||||||| ||||| || ||||||||||| |||||||| Sbjct 9604 CTTCGACTTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 9658 Score = 134 bits (148), Expect = 3e-26 Identities = 174/238 (73%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||||||||| | || || | |||| ||| ||| || ||||| || |||| Sbjct 9940 CATG-CCACCGCGGAGACGGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGT 9998 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| || || || || || | || || || |||||||||| |||||| || || Sbjct 9999 CGGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTG---AT 10055 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || ||||| ||||||||||| || || || || ||||| || | ||| Sbjct 10056 CCGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGC 10115 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || ||||| ||||| ||||| || ||||| ||||||||||| || ||||| || Sbjct 10116 CCTCAACCTCGAGGGTGATGGTCTTTCCCGTCAGGGTCTTGACGAAGATTTGCATGAT 10173 Score = 129 bits (142), Expect = 1e-24 Identities = 171/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || | || | || ||| || ||||| || |||| Sbjct 8972 CATG-CCACCGCGCAGGCGGAGGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGT 9030 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | || || || ||||| || || ||||| |||||||||| ||||| || | Sbjct 9031 CGGACAAGGTACGGCCATCTTCCAACTGCTTTCCAGCGAAGATCAAGCGCTGCTGG---T 9087 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || ||||| ||||||||||| || || || ||||| || || | ||||| Sbjct 9088 CTGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGC 9147 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 9148 CTTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 9202 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | || || || ||||| || |||||| ||| ||||| || ||| Sbjct 9219 AGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCT 9278 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || || |||||||| ||||| || || |||||| || ||||| || Sbjct 9279 TCAAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGG---TCTGGGGGAATGCCTTCCTTG 9335 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || ||||| || || || ||||| || || | ||| ||| ||||| | ||||| Sbjct 9336 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGCCTTCGACTTCCAAAGTGATA 9395 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || |||| ||||||||||| |||||||| Sbjct 9396 GTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 9430 >seq806 Length=689343 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||||| || || | |||| || || || ||||| || ||||| Sbjct 391724 CCTCCACGGAGTCGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCACTC 391783 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || | || || || || ||||| |||||||| ||| |||||| Sbjct 391784 AATGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGA---TCTGGG 391840 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || |||||||| || |||||||| || || || | ||||| ||| Sbjct 391841 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGCCTTCA 391900 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||||||||| || || || ||||||||||| |||||||| Sbjct 391901 ACTTCCAGGGTGATCGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 391950 Score = 114 bits (126), Expect = 3e-20 Identities = 168/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| | ||| || || | || | || ||| || || || || |||| Sbjct 392176 CATG-CCGCCGCGCAATCTGAGGACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGT 392234 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| ||||| || ||||| | || || || |||||||| |||||||| ||| | Sbjct 392235 CGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGA---T 392291 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || ||||| || || || || || || || ||||| || || | || Sbjct 392292 CTGGGGGAATACCTTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAAC 392351 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 392352 CCTCAACTTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 392406 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| |||||||| ||| ||||| ||||| || || ||||| || Sbjct 393006 TTACCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTTG 393065 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || ||||| || | || ||| || || || ||||| ||||| ||||| Sbjct 393066 GCCTTGACATTTTCAATGGTGTCTGAGCCTTCAACCTCAAGGGTGATGGTCTTGCCGGTA 393125 Query 288451 AGAGTCTTGACGAATATCTGCATTAT 288476 |||||||||||||| |||||||| || Sbjct 393126 AGAGTCTTGACGAAGATCTGCATGAT 393151 >seq793 Length=17056 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/146 (74%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 || || |||||||||| ||| || ||| || ||| || ||||| ||||||||||| Sbjct 5318 TTACCAGCGAAGATCAAACGTTGCTGA---TCCGGGGGAATGCCTTCCTTATCCTGGATC 5374 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || ||||| || | || | || || || || ||||| ||||| ||| Sbjct 5375 TTGGCCTTGACATTTTCGATGGTGTCAGAGGCCTCAACCTCAAGGGTGATGGTCTTGCCG 5434 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| |||||||| Sbjct 5435 GTGAGGGTCTTGACGAAGATCTGCAT 5460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179640192537320