Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq402 95.1 1e-14 seq491 86.0 7e-12 seq319 86.0 7e-12 seq585 84.2 3e-11 >seq402 Length=45079 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 10960 ACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 11019 ||| ||||| ||||||||||||||||| | ||| || || || | |||||| | Sbjct 33179 ACCAACGGCATCAATTTCATCGATGAACAGGATGCAGGGGGAGTTCTTACGGGCCATGGT 33120 Query 11020 AAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGC 11079 || || || || || | | ||||||||| || |||||||| | || | || | Sbjct 33119 GAACATGTCACGAACACGGGCAGGACCGACACCGACGAACATTTCGAGGAATTCGGAACC 33060 Query 11080 GGA-ACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11138 ||| ||| | ||||||||| ||||||| |||||| || |||| |||||| ||||| | Sbjct 33059 GGAGACAGT-GATGAAGGGTACGTTGGCTTCACCGGCAGTGGCCTTGGCGAGAAGGGTTT 33001 Query 11139 TCCCCGTCCCAGGT 11152 | || || |||||| Sbjct 33000 TACCGGTACCAGGT 32987 >seq491 Length=111361 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 172798 CTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAAC 172857 ||| ||||| || ||||| ||||| ||| |||| ||||| | ||||| || || || || Sbjct 65715 CTTACCACGAAGCGGGAAGACACCATAGCGATCGCGACCGATGACAGACAGGCCTGCGAC 65656 Query 172858 TGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACA 172902 ||||||||||| ||||| || || || |||| ||| ||||| || Sbjct 65655 GGCGAGGGTCTTGGCGGAGTCTCCTTCGGTCAGGATTAGCGTGCA 65611 >seq319 Length=516904 Score = 86.0 bits (94), Expect = 7e-12 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || | || || ||||| |||||||||||||| ||||| ||| | ||| || Sbjct 271834 GCAAAGTCGCGATGAAGGCCCTCATCACGGGAGATGAGCTCATTGGAGTGGGTCAGACCG 271893 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||||||||| || | ||| | |||||| || || || || || ||||||||| Sbjct 271894 GGCATGAGACCGCGTTCCTTGAGCCAGAAGATGGCTGCGAAGGACCCGCTGAAGAAGATG 271953 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG-TGTCAAA 126225 ||||| || ||||| || | || || || | ||||| ||| | | | || | Sbjct 271954 CCCTCGACGGCGGCGAAAGCGATGACCCGTTCGCCGAAGGA-CGCCTCCTGGTTGCTGAT 272012 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGA 126266 ||| | |||||| | ||||| |||| ||| |||||| Sbjct 272013 CCATGCGAACGCCCAATCGGCCTTCTTCTTGATGAACGGGA 272053 >seq585 Length=222271 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || | || || ||||| |||||||| ||||| ||||| ||| | ||| || Sbjct 95190 GCAAAATCGCGATGAAGGCCCTCATCACGGGAAATGAGCTCATTGGAGTGGGTCAGACCG 95249 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||||||||| || | ||| | |||||| || || ||| || || ||||||||| Sbjct 95250 GGCATGAGACCGCGTTCCTTAAGCCAGAAGATGGCCGCAAAGGACCCGCTGAAGAAGATG 95309 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 ||||| || ||||| || | || || || | ||||| Sbjct 95310 CCCTCGACGGCGGCGAAGGCGATGACCCGTTCGCCGAAGGA 95350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597346581095200