Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq806 114 1e-20 seq394 84.2 2e-11 seq464 82.4 8e-11 >seq806 Length=689343 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || | ||||| || | || || |||||||| || ||||| Sbjct 392672 TCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAG 392731 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | || | || ||||||||| ||| || |||| || Sbjct 392732 ATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTC 392791 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||||| ||| || |||| |||||||| ||||| || || ||||| ||| Sbjct 392792 TCAATAGTGTCGCTGCCTTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACA 392851 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 392852 AAGATCTGCAT 392862 >seq394 Length=505719 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || ||||| || || || || | || || |||||||| || ||||| Sbjct 8556 TCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAG 8615 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || || |||||||| | || | || |||||||| ||| || |||| | Sbjct 8616 ATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTT 8675 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||||| ||| || |||| || || || ||||| || || ||||| || Sbjct 8676 TCAATGGTGTCGCTGCCTTCGACTTCGAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACG 8735 Query 42198 AAGATTTGCAT 42208 ||||||||||| Sbjct 8736 AAGATTTGCAT 8746 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || | || || || | || || | |||||| |||||||| Sbjct 9012 TCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCTTCCAACTGCTTTCCAGCGAAG 9071 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | ||||||||||| | || | | ||||| ||| ||| || |||| || Sbjct 9072 ATCAAGCGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTC 9131 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||||| ||| || || | |||||||| ||||| || || ||||| || Sbjct 9132 TCGATGGTGTCGCTGCCTTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACG 9191 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 9192 AAGATCTGCAT 9202 >seq464 Length=41314 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTC-GGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||||||| ||| ||| | |||||||||| |||||| | ||||||||||| ||| Sbjct 41002 AAAAATTTTCCTCTCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATA 40943 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||||||| || Sbjct 40942 CTTACCACTATACTACCGAAGA 40921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543206417249600