Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22]
940 sequences; 65,093,147 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq97 259 5e-64
seq585 237 2e-57
>seq97
Length=72787
Score = 259 bits (286), Expect = 5e-64
Identities = 962/1488 (65%), Gaps = 36/1488 (2%)
Strand=Plus/Plus
Query 93887 CCATGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTT 93946
||||| |||| || || |||||||| ||||| ||||| ||| |||||||| || || |
Sbjct 69183 CCATG-CCACGCCCACTCTGTTCAATGCGGGTACCCCTCGGCCTCAGATGTCGTCCTGCT 69241
Query 93947 TCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTG 94006
|| || | || | || ||| |||| || |||||||||| | ||| | || |
Sbjct 69242 TCTTGCTAACTATGTCGGATGACAGCATCGATGGCATTTTCGACACATTGAAGCAATGCG 69301
Query 94007 CGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGG 94066
| | |||||||| | || || || || ||| ||| ||| ||| || | ||||||| |
Sbjct 69302 CAAAGATCTCAAAGTCAGCCGGCGGCATTGGGCTCAATGTTCACAACATCCGTGCCACTG 69361
Query 94067 GTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCT 94126
| ||| |||| |||||| || |||||| ||||| ||||| |||||||| || |
Sbjct 69362 GATCCCACATTGCTGGTACCGGCGGAGTCTCCAATGGCCTTGTCCCGATGCTCCGTGTAT 69421
Query 94127 TCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGG 94186
|||||||| | || |||||||| || ||||| || | | | || |||||||
Sbjct 69422 TCAACAACACTGCTCGCTACGTCGATCAGGGCGGAAACAAGCGTCCTGGCGCTTTCGCCA 69481
Query 94187 TCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACG 94246
|||| ||||| || |||||||| ||| | | |||| || || ||||| | |
Sbjct 69482 TCTACCTCGAACCGTGGCACGCAGACATCTTTGAGGTCATGGATATGAAGAAGAATCGTG 69541
Query 94247 GCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTA 94306
| || ||| | ||| | || |||||||| ||||||||| | || || ||||| |
Sbjct 69542 GTGCTGAGGAAGAGCGTGCCCGTGATCTCTTCTATGCTCTCTGGATCCCCGATCTTTTCA 69601
Query 94307 TGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGAC 94366
|||| ||||| || | || | ||||| ||| | || ||| | || || ||||| |
Sbjct 69602 TGAAGCGCGTGGAAACCGACGGCACCTGGTCTCTGATGTGCCCCCACGAGTGCCCCGGTC 69661
Query 94367 TGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGG-GC 94425
| ||| || || | || || || | || | ||||| ||| || ||
Sbjct 69662 TTGAGGACTGCTGGGGCGAGAAGTTCGAGGAGCTCTACACGAAATACGAGTCGGAGAAGC 69721
Query 94426 AAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485
|| | ||| || | ||| | | || ||| | || ||| | || || ||
Sbjct 69722 GTTTCC-GAAAGCAGATCAAGGCTCGCGATCTCTGGAAGCACATCATCAGCGCTCAAGTC 69780
Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545
|| || || || |||||||| | | ||| ||| | |||| ||| ||||||||||
Sbjct 69781 GAAACTGGCACCCCCTACATGCTTTACAAAGACGCCTGCAACCGTAAGAGCAACCAGCAG 69840
Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605
||||||| |||||| || || ||||||||||| || ||||| || | | ||
Sbjct 69841 AACCTCGGAACGATCAAATGCAGCAACCTGTGCACCGAAATCGTCGAATACAGCGCCCCT 69900
Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCC 94665
|| ||| | || || || || |||| || ||| || | ||||| | ||
Sbjct 69901 GATGAGGTCGCCGTCTGCAATCTGGCGTCGATCGCGTTGAACCGCTTCGTCGGCC---CC 69957
Query 94666 TACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACT-TCGCGGGAAGGATGGT 94724
|| ||| | |||||| | | || ||| || || || ||| ||
Sbjct 69958 AAC-CGTGAA--------TTCGATTTCAACAAG-TTGAAGGCTGTCACG--AAGACTGTC 70005
Query 94725 --CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAAC 94782
| |||| |||||| | | ||||||| |||| ||||||||||||||||| || ||
Sbjct 70006 ACCAAGAACTTGAACAAGATCATCGACATCAACTATTACCCCGTCCCGGAGGCTGAAAAG 70065
Query 94783 TCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTG 94842
|| ||| | ||||| |||||||| |||||||||||||| |||| || || |
Sbjct 70066 TCGAACAAGCGCCATCGTCCCATCGGTATCGGCGTCCAGGGCCTCGCTGATGCCTTCCAA 70125
Query 94843 ATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGT-TTGAATTTGAACATATTCGA 94901
| ||||| || || | | || | | ||| || | ||||| | | || |||||
Sbjct 70126 CTCATGCGACTTCCATTCACTTCCGAAGGCGC-ACGTCTGTTGAACAAGCAGATCTTCGA 70184
Query 94902 AAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCC 94961
| || |||| || ||| | || || | | |||||| | | | || ||
Sbjct 70185 GACTATCCATTATGGTGCCCTTGAAGCGTCGGCGGAATTGGCCGGCAC---CCTAGGCCC 70241
Query 94962 ACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021
| ||||| | | || || || || |||||||| | || |||| | |||
Sbjct 70242 ATACGAAACCTATGAAGGCTCTCCGGTGTCCAAGGGCATTCTGCAACACGACATGTGGAA 70301
Query 95022 TGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCG--CTGATGTTATCAAACAC 95079
||||| || | |||| ||||||| | || || | || | | | || ||
Sbjct 70302 TGTGACCCCGACCAACCTGTGGGACTGGGCCCCGCTTCGGGAACTCA--TCAAGAAGAAC 70359
Query 95080 GGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTT 95139
||||| ||| |||| || || ||||| ||||| ||||||||||| |||||||| ||
Sbjct 70360 GGTGTTCGCAACTCGCTCCTCGTCGCCCCTATGCCGACGGCCTCCACCGCGCAGATTCTC 70419
Query 95140 GGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCC 95199
|| ||||| || || |||| |||| | | ||||||| |||| | | || || ||
Sbjct 70420 GGAAACAATGAATCCATCGAGCCCTACCGCACCAACGTCTACACTCGTGGTGTCCTTTCC 70479
Query 95200 GGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTC--TCTGGGTGTGT 95257
|| |||| || | ||| || || | || || |||| | | | |
Sbjct 70480 GGTACTTTCCAAATCGTGAACCCCCATCTGTTGAACGATCT--CGTCGAGCGTAATCTCT 70537
Query 95258 GGGGTGACAAGGTCAAGAACCAACTGCTACGC-GCCAACGGCTCCGTCCAGAACATCCCG 95316
|| ||| | ||||||||||| |||| ||| | || |||||||| || ||||||||
Sbjct 70538 GGAACGACGATGTCAAGAACCACTTGCT-CGCTGGCAGTGGCTCCGTTCAAAACATCCCC 70596
Query 95317 CAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATC 95364
|| ||||| ||| |||||| | ||||||||||||| ||||| |||
Sbjct 70597 GGCATCCCGGATGACGTCAAGGAGATCTACAAGACCGTCTGGGAAATC 70644
>seq585
Length=222271
Score = 237 bits (262), Expect = 2e-57
Identities = 956/1487 (64%), Gaps = 44/1487 (3%)
Strand=Plus/Minus
Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951
||||| || || |||||||| ||||| ||||| ||| |||||||| || || ||||||
Sbjct 92758 GCCACGCCCACACTGTTCAATGCGGGTACCCCTCGGCCTCAGATGTCGTCCTGCTTCCTG 92699
Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011
|||| | | |||||| | || || ||||||| ||| ||| | ||||| |
Sbjct 92698 TTGACCATGTCAGAGGACTCCGTTGAAGGCATCTTCGACACCCTGAAGCAGTGTGCTCGC 92639
Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071
||| || | ||| || || ||||| |||| |||||| || | |||||| || ||
Sbjct 92638 ATCAGCAAGTCCGCTGGTGGCATCGGCATCAACGTCCACAACATCCGTGCCGCCGGAACC 92579
Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131
|| || || ||||| ||| ||||||| ||||| |||||||| |||||||||
Sbjct 92578 CGTGTCGCTGGCACTGGTGGCATCTCGCACGGCCTTGTCCCGATGCTCCGCGTCTTCAAC 92519
Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191
||| |||| || ||| | |||| || ||| | | | ||| | || || ||||||
Sbjct 92518 AACACGGCTCGTTACATCAACCAAGGCGGT---AAGCGTCCCGGTGCCTTTGCCGTCTAT 92462
Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251
|||||||||||||| || ||||| | || |||| || |||||| || |
Sbjct 92461 CTCGAGCCCTGGCATGCCGACGTTTTCGAAGTCCTCGATCTCAAGAAGAACACTGGTGCC 92402
Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311
||| || | ||| | |||||||||||||| |||||| | || || || || |||||
Sbjct 92401 GATGAAGAACGTGCCCGTGACCTCTTCTACGCCCTCTGGATCCCCGATCTCTTCATGAAG 92342
Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371
|||||||| | || ||||| || | || ||| |||| ||||| || || |
Sbjct 92341 CGCGTCGAAACCGACGGAACCTGGTCCCTGATGTGCCCCCATGAGTGTCCTGGTCT---C 92285
Query 94372 GACGTTTG-TGGATCGCG--TTTTGAAGACTTGTATGCTCGTTACGAAT-CGCAGGGCAA 94427
|| | ||| ||| || | ||||| | | || | ||||| | || | ||
Sbjct 92284 GAGGATTGCTGGGGCGAGGAGTTTGAGCAGCTCTACACCAAATACGAGTCCGAAAAGC-- 92227
Query 94428 GGCCAGGAAGGTTA--TGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485
|| | || | | ||| | | || ||| | || || || | | || ||
Sbjct 92226 -GCTACCGTCGTCAAGTCCTTGCCCGTGACCTTTGGAAGCACATTGTCGGCTCTCAAGTT 92168
Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545
|| || || ||||||||||| | | ||| || | |||| ||| |||||| |||
Sbjct 92167 GAAACCGGCACGCCCTACATGGTCTACAAAGATGCCTGCAACCGTAAGAGCAACCAACAG 92108
Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605
||||||| |||||| | || |||||||||||||| ||||| || | | ||
Sbjct 92107 AACCTCGGAACGATCAAATGTAGCAACCTGTGCACCGAGATCGTCGAATACAGCGCGCCT 92048
Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCC 94665
|| ||| | || || || || |||| || ||| || | ||||| || |||
Sbjct 92047 GATGAGGTCGCCGTCTGCAATCTGGCGTCGATCGCGTTGAACCGCTTCGT-CG----GCC 91993
Query 94666 TACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACT-TCGCGGGAAGGATGGT 94724
| || | | |||||| | | || ||| || || || | || ||
Sbjct 91992 ------CCAACCG-TGAATTCGATTTCAACAAG-TTGAAGGCTGTCACG---AAGACCGT 91944
Query 94725 ---CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAA 94781
| |||| |||||| | | ||||||| |||| ||||| || |||||||| || ||
Sbjct 91943 CACCAAGAACTTGAACAAGATCATCGACATCAACTATTACCCTGTTCCGGAGGCTGAAAA 91884
Query 94782 CTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGT 94841
|| ||| | ||||| |||||||| |||||||||||||| |||| || || |
Sbjct 91883 GTCGAACAAGCGCCATCGTCCCATCGGTATCGGCGTCCAGGGCCTCGCTGATGCCTTCCA 91824
Query 94842 GATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGA 94901
| ||||| ||||| | || || | | |||| | || |||| | | || || ||
Sbjct 91823 ACTCATGCGACTGCCGTTCGCTTCCGAAGGCGCGAGGCGTCTGAACAAGCAGATCTTTGA 91764
Query 94902 AAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCC 94961
| ||| || ||||| ||| | || || | | ||||| | | || | |
Sbjct 91763 GACCATCTACTACGGTGCCCTTGAAGCGTCGGCGGAACTGGCCGGTATTCATGGTG---C 91707
Query 94962 ACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021
|||| | | || || || || |||||||| | || |||| | |||
Sbjct 91706 CTACGAGACCTATGAAGGGTCCCCGGTGTCGAAGGGCATTCTGCAACACGACATGTGGAA 91647
Query 95022 TGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACG--CGCTGATGTTATCAAACAC 95079
|| || || | || | ||||||| | || || || | | | || ||
Sbjct 91646 GGTCAACCCGACTAACCTATGGGACTGGGCCCCGCTTCGGAAACTCA--TCAAGAAGAAC 91589
Query 95080 GGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTT 95139
||||| ||| |||| || || ||||||||||| ||||| ||||| |||||||| ||
Sbjct 91588 GGTGTCCGCAACTCGCTCCTCGTCGCCCCCATGCCGACGGCTTCCACCGCGCAGATTCTC 91529
Query 95140 GGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCC 95199
||||||||||| || |||| |||| || ||| ||||||| | | || || || ||
Sbjct 91528 GGCAACAACGAATCCATCGAGCCCTATGCCGACAATGTGTACACCCGTCGAGTCCTTTCC 91469
Query 95200 GGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGTGTG 95258
|| |||| || | || ||| || || ||||| || || | || | ||
Sbjct 91468 GGCACTTTCCAAATCGTGAATCCGCATCTGCTGAAGGACCTTGTCG-ATTTGAACCTCTG 91410
Query 95259 GGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCA 95318
| ||| | | |||||| ||| | ||||| ||||| || ||||||||||
Sbjct 91409 GAATGAAGACATGAAGAACAGCCTGATCGCCGCCAGTGGCTCGGTGCAGAACATCCGAGG 91350
Query 95319 AATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCC 95365
|| || || ||||||||| ||| |||||||| || ||||||||||
Sbjct 91349 CATCCCAGACTACATCAAGGAGCTGTACAAGACTGTCTGGGAGATCC 91303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494717387002400
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