Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq585 241 1e-58 seq97 199 4e-46 seq394 100 3e-16 seq806 95.1 1e-14 >seq585 Length=222271 Score = 241 bits (266), Expect = 1e-58 Identities = 389/554 (70%), Gaps = 4/554 (1%) Strand=Plus/Plus Query 153582 ACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCT 153640 ||| | || |||| || || ||||||||||| |||||||| ||| || |||| |||| Sbjct 91998 ACGAAGCGGTTCAACGCGATCGACGCCAGATTGCAGACGGCGACCTCATCAGGCG-CGCT 92056 Query 153641 GTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATT 153700 ||| | |||||||||| ||| |||||||| ||||| || || | || || || || Sbjct 92057 GTATTCGACGATCTCGGTGCACAGGTTGCTACATTTGATCGTTCCGAGGTTCTGTTGGTT 92116 Query 153701 GCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGT 153760 ||| || || ||||| || |||||| ||| |||||| || |||||| || ||||| | Sbjct 92117 GCTCTTACGGTTGCAGGCATCTTTGTAGACCATGTAGGGCGTGCCGGTTTCAACTTGAGA 92176 Query 153761 TTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCT 153820 |||| || | | ||||| | || | || | | || ||||| ||| Sbjct 92177 GCCGACAATGTGCTTCCAAAGGTCACGGGCAAGGACTTGACGACGGTAGCGCTTTTCGGA 92236 Query 153821 CTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACA 153880 ||||||| ||| || |||||||||| ||||| |||| || |||| || ||||| Sbjct 92237 CTCGTATTTGGTGTAGAGCTGCTCAAACTCCTCGCCCCAGCAATCCTCGAGACCAGGACA 92296 Query 153881 CTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATC 153940 || ||| || |||||||| ||||| | |||||| | |||||| |||||| ||||| Sbjct 92297 CTCATGGGGGCACATCAGGGACCAGGTTCCGTCGGTTTCGACGCGCTTCATGAAGAGATC 92356 Query 153941 CGGCACCCAGAGCGCGTACATGAGGTCGCGCGC-CTTGCAATCCTCCGCGCCCATGTTGC 153999 || | |||||| ||||| | |||||| || || | | | || || || || |||| Sbjct 92357 GGGGATCCAGAGGGCGTAGAAGAGGTCACGGGCACGTTC-TTCATCGGCACCAGTGTTCT 92415 Query 154000 GTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGG 154059 || |||| ||| || | | |||||| |||||||| || | |||||||| | || Sbjct 92416 TCTTGAGATCGAGGACTTCGAAAACGTCGGCATGCCAGGGCTCGAGATAGACGGCAAAGG 92475 Query 154060 CACCTTTACGCTTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCA 154119 |||| |||||| ||||| || | || || || || | |||||||||||||| | || Sbjct 92476 CACCGGGACGCTTACCGCCTTGGTTGATGTAACGAGCCGTGTTGTTGAAGACGCGGAGCA 92535 Query 154120 TGGGTTCCAGGCCG 154133 | || | |||||| Sbjct 92536 TCGGGACAAGGCCG 92549 >seq97 Length=72787 Score = 199 bits (220), Expect = 4e-46 Identities = 379/555 (68%), Gaps = 5/555 (1%) Strand=Plus/Minus Query 153582 ACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTG 153641 ||| | || |||| || || ||||||||||| |||||||| ||| || | | ||||| Sbjct 69950 ACGAAGCGGTTCAACGCGATCGACGCCAGATTGCAGACGGCGACCTCATCAGGGGCGCTG 69891 Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 || | ||||| |||| ||| |||||||||||||| || || | || ||||| ||| Sbjct 69890 TATTCGACGATTTCGGTGCACAGGTTGCTGCATTTGATCGTTCCGAGGTTCTGCTGGTTG 69831 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTT 153761 || || || ||||| ||||||||| | |||||||| || ||| || |||||||| | Sbjct 69830 CTCTTACGGTTGCAGGCGTCTTTGTAAAGCATGTAGGGGGTGCCAGTTTCGACTTGAGCG 69771 Query 153762 TCGACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTC 153821 || ||| | | || || | || | | ||| || | || ||| | Sbjct 69770 CTGATGATGTGCTTCCAGAGATCGCGAGCCTTGATCTGCTTTCGGAAACGCTTCTCCGAC 69711 Query 153822 TCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACAC 153881 |||||| | ||| || ||| |||| ||||| ||||||| | || ||||| ||| Sbjct 69710 TCGTATTTCGTGTAGAGCTCCTCGAACTTCTCGCCCCAGCAGTCCTCAAGACCGGGGCAC 69651 Query 153882 TGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCC 153941 | || || |||||||| ||||| | |||||| | ||||| |||||| ||||| Sbjct 69650 TCGTGGGGGCACATCAGAGACCAGGTGCCGTCGGTTTCCACGCGCTTCATGAAAAGATCG 69591 Query 153942 GGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGT 154001 || | |||||| || || | ||| || || || ||||| || ||| | | | | Sbjct 69590 GGGATCCAGAGAGCATAGAAGAGATCACGGGCACGCTCTTCCTCAGC-ACCACGATTCTT 69532 Query 154002 -TTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGC 154060 |||| || | || | ||||||| |||||||| ||||| | ||||| ||| | || Sbjct 69531 CTTCATATCCATGACCTCAAAGATGTCTGCGTGCCACGGTTCGAGGTAGATGGCGAAAGC 69472 Query 154061 ACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCAC 154117 || |||| ||||||||||||||||||| ||| | | |||||||| || || | Sbjct 69471 GCCAGGACGCTTGTTTCCGCCCTGATCGACGTAGCGAGCAGTGTTGTTGAATACACGGAG 69412 Query 154118 CATGGGTTCCAGGCC 154132 ||| || | ||||| Sbjct 69411 CATCGGGACAAGGCC 69397 >seq394 Length=505719 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| | | || || || | | | || |||||||| |||||||||||| | Sbjct 8748 CCACCACGCAACCTGAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAC 8807 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||| ||||| || || |||| | || ||||| || ||||| || || Sbjct 8808 AAAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGCTGGTCTGGGGGG 8867 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | ||| | |||||||| ||| || Sbjct 8868 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGAACCCTCAACT 8927 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || ||||||| || || ||||| ||||||||| Sbjct 8928 TCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCATG 8975 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || ||||| | ||| || || || | | | || ||||| || |||||||||||| Sbjct 9431 GCCACCGCGCAATCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 9490 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || |||||||| || || |||| |||| ||||| || || || || || Sbjct 9491 CAAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGG 9550 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || ||| || || | | || | |||||| | || || Sbjct 9551 GATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCGCTGCCTTCGAC 9610 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| || | ||| || || || || || || || || ||||||||| Sbjct 9611 TTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 9659 >seq806 Length=689343 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| |||| || || |||||||| || || |||| | Sbjct 391757 GACTCCTTCTGGATGTTGTAGTCACTCAATGTGCGGCCATCCTCGAGCTGCTTGCCGGCA 391816 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || || || || ||||| ||||| ||| || ||| | Sbjct 391817 AAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACA 391876 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | || || || | || | ||| || ||||| || || || Sbjct 391877 TTCTCGATGGTGTCGCTGCCTTCAACTTCCAGGGTGATCGTCTTGCCAGTAAGGGTCTTG 391936 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 391937 ACGAAGATCTGCATG 391951 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | || | ||| || || | | | || ||||| || |||||||| ||||| Sbjct 392407 GCCACCGCGAAGTCGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGCT 392466 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||||| || || |||| |||| ||||| || ||||||||||| Sbjct 392467 CAATGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGAGG 392526 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| || || ||| | || | || | | ||| | ||||||| | || | Sbjct 392527 GATGCCTTCCTTATC-TTGAATCTTAGCCTTGACGTTTTCGATGGTGTCGCTGCCTTCAA 392585 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | |||| || | || || || || || || || ||||| ||||||||| Sbjct 392586 CTTCGAGGGTGATAGTCTTTCCGGTAAGGGTCTTGACAAAGATCTGCATG 392635 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| | ||| | | || ||||| || |||||||||||| Sbjct 392635 GCCACCGCGAAGACGGAGAACGAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGA 392694 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| || || || || || |||| |||| |||||||| |||||||| || Sbjct 392695 AAGAGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 392754 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | |||||| | || || Sbjct 392755 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATAGTGTCGCTGCCTTCAAC 392814 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| || | || || ||||| || || || ||||| ||||||||| Sbjct 392815 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 392863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256568916800