Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq394 109 4e-19 seq806 89.7 4e-13 >seq394 Length=505719 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || | |||||||||||| || ||||| |||||||| |||||| Sbjct 8520 CCACCGCGCAGACGAAGGACGAGATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGCTG 8579 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | || ||||| ||| | || | ||| || ||||| ||| Sbjct 8580 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGA 8639 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || || |||| || || ||||| ||| || Sbjct 8640 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCGCTGCCTTCGACT 8699 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | |||||| || || || || || || || || || ||||||||| Sbjct 8700 TCGAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATA 8747 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || |||||||| ||| ||| | | | || || Sbjct 9962 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCG 10021 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| | ||||||||||| || || ||||| |||||||| || Sbjct 10022 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCCGGGGGAATGCCTTCCTTATCCTGG 10081 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| |||| || || ||| || || || | ||| ||||| || Sbjct 10082 ATCTTGGCCTTGACATTTTCGATGGTGTCGGAGCCCTCAACCTCGAGGGTGATGGTCTTT 10141 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || || || |||||||| Sbjct 10142 CCCGTCAGGGTCTTGACGAAGATTTGCAT 10170 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| || | || || || |||||||| || ||||| |||||||| ||| Sbjct 8748 CCACCACGCAACCTGAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAC 8807 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||||| | || ||||| ||| | || | ||| || ||||| || Sbjct 8808 AAAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGCTGGTCTGGGGGG 8867 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || || |||| || || ||| | || || Sbjct 8868 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGAACCCTCAACT 8927 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| || || || || |||| || || ||||| || ||||| Sbjct 8928 TCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 8974 >seq806 Length=689343 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | | ||| | ||| || || || || || || |||||||| ||| Sbjct 392634 TGCCACCGCGAAGACGGAGAACGAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGG 392693 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | ||||| | || || || ||| | || | |||||| ||||| | Sbjct 392694 AAAGAGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGG 392753 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| || ||| || ||| | || ||||| ||||| ||| | Sbjct 392754 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATAGTGTCGCTGCCTTCAA 392813 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| ||||| || || || || || || ||||| || ||||| Sbjct 392814 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 392862 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || | ||| || || |||||||| || || || ||||||||||||| Sbjct 392406 TGCCACCGCGAAGTCGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGC 392465 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | | | | || || | || ||||| ||| | || | ||| || ||||| | Sbjct 392466 TCAATGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGAG 392525 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || |||||||| || ||| || || || |||| || || ||||| ||| | Sbjct 392526 GGATGCCTTCCTTATCTTGAATCTTAGCCTTGACGTTTTCGATGGTGTCGCTGCCTTCAA 392585 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| || || || || || || || || ||||| || ||||| Sbjct 392586 CTTCGAGGGTGATAGTCTTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 392634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357387905627900