Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq394 114 1e-20 seq806 105 6e-18 seq585 102 8e-17 >seq394 Length=505719 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || || || || || || ||||| ||| Sbjct 9944 CCACCGCGGAGACGGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 10003 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || |||||| ||||||| ||||||||||| || || Sbjct 10004 AGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCCGGGGGA 10063 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| ||| ||| || ||||| | ||||| |||||| | | ||| || Sbjct 10064 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGCCCTCAACC 10123 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||| | || || || ||||| || || || || || |||||| Sbjct 10124 TCGAGGGTGATGGTCTTTCCCGTCAGGGTCTTGACGAAGATTTGCATG 10171 >seq806 Length=689343 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | ||| | ||||| || | |||||||| || || || ||||| || | | Sbjct 391724 CCTCCACGGAGTCGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCACTC 391783 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || || |||| | ||||||||||| || || Sbjct 391784 AATGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGGGGA 391843 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||||||| ||| || || | | |||| |||||| | | || ||| Sbjct 391844 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGCCTTCAACT 391903 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | ||| ||||| || || || || || || ||||||||| Sbjct 391904 TCCAGGGTGATCGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCATG 391951 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| |||| | ||||| || | ||||| || || ||||| ||||| ||| Sbjct 392180 CCGCCGCGCAATCTGAGGACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCGGAG 392239 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| |||| | ||||||||||| || || Sbjct 392240 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 392299 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| || || ||||| | || | |||||| | || ||| ||| Sbjct 392300 ATACCTTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAACCCTCAACT 392359 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || ||||| || || || || || ||||||||| Sbjct 392360 TCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCATG 392407 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || |||||| |||| | ||||||||||| ||||| ||||| |||||||| ||| || Sbjct 393006 TTACCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTTG 393065 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||||| | ||| | |||||| | | || || || | ||| | || |||||||| Sbjct 393066 GCCTTGACATTTTCAATGGTGTCTGAGCCTTCAACCTCAAGGGTGATGGTCTTGCCGGTA 393125 Query 127091 AGAGTTTTTACAAAAATCTGCATG 127114 ||||| || || || ||||||||| Sbjct 393126 AGAGTCTTGACGAAGATCTGCATG 393149 >seq585 Length=222271 Score = 102 bits (112), Expect = 8e-17 Identities = 609/958 (64%), Gaps = 32/958 (3%) Strand=Plus/Plus Query 145848 CAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCATGTCTATCAT 145907 ||| || || ||||| |||||||||||| | | || ||||||||||| || || || Sbjct 91232 CAAGTTGAGCGATTGCGACTGATCAATGAAGGCTCCACGATCGGCGGCCATCTCGATGAT 91291 Query 145908 GCACTT-TGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGT--GCTGGGGTAT 145964 | ||| ||| || ||||| | || || | || ||||||| || ||||| | Sbjct 91292 GTCCTTCTGA-CGGATCTCCCAGACAGTCTTGTACAGCTCCTTGATGTAGTCTGGGATGC 91350 Query 145965 TTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGT 146024 ||| ||||||||||| || ||| | |||| | | |||| || ||| | | Sbjct 91351 CTCG--GATGTTCTGCACCGAGCCACTGGCGGCGATCAGGCTGTTCTTCATGTCTTCATT 91408 Query 146025 GTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCC 146084 | | |||||| || || ||| |||| | |||| | | || || | || || ||| Sbjct 91409 CCAGAGGTTCAAATCGACAAGGTCCTTCAGCAGATGCGGATTCACGATTTGGAAAGTGCC 91468 Query 146085 GGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACC 146144 || || || || | ||||| ||| || | ||||||| || |||||||| || Sbjct 91469 GGAAAGGACTCGACGGGTGTACACATTGTCGGCATAGGGCTCGATGGATTCGTTGTTGCC 91528 Query 146145 GAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCC 146204 ||| |||||||| || | ||| || |||||| || || || | ||||| | || || Sbjct 91529 GAGAATCTGCGCGGTGGAAGCCGTCGGCATGGGGGCGACGAGGAGCGAGTTGCGGACACC 91588 Query 146205 GTGTCTT-TGAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGA 146263 || |||| | || || ||| || || ||| | ||| | | | || || | || Sbjct 91589 GT-TCTTCTTGATGAGTTTCCGAAGCGGGGCCCAGTCCCATA---GGTTAGTCGGGTTGA 91644 Query 146264 TATTGTAGTTGTCGTAATGCATAGTGCC--GCGGAACAGGGGGCTATTCTCGTACGATTC 146321 || | |||||| |||| | |||| || || |||| | | || || | || Sbjct 91645 CCTTCCACATGTCGTGTTGCAGAATGCCCTTCGACACCGGGGACCCT--TCATAGGTCTC 91702 Query 146322 ATAAGGACCGTCGATCTTGGCCAGTT-CGCAGCTAGCTTCCAGAGCCGAAAAGTATATGG 146380 || | ||| | || |||||||| ||| | ||||| || || |||| |||| Sbjct 91703 GTAGGCACCATGAATACCGGCCAGTTCCGCCG-ACGCTTCAAGGGCACCGTAGTAGATGG 91761 Query 146381 TCTCCGCGATCATGTAGTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGGGATATCG-AGA 146439 |||| |||| | ||| | | ||| || | ||| || | || | ||| | Sbjct 91762 TCTCAAAGATCTGCTTGTTCAGACGCCTCGCGCCTTCGGAAGCGAACGGCA-GTCGCATG 91820 Query 146440 AGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTT- 146498 || ||||| || ||||| ||||| | |||| ||| | ||| || || |||||| Sbjct 91821 AGTTGGAAGGCATCAGCGAGGCCCTGGACGCCGATACCGATGGGACGATGGCGCTTGTTC 91880 Query 146499 -ACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTAC 146557 ||| || |||| ||| | || || | |||| |||||||||||||||| | || Sbjct 91881 GACTTTT--CAGCCTCCGGAACAGGGTAATAGTTGATGTCGATGATCTTGTTCAAGTTCT 91938 Query 146558 GCACGACAATTTTCGTCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGT 146617 ||| | ||||| | | |||| | | | || || || | || | Sbjct 91939 TGGTGACGGTCTTCGTGACAGCCTTCAACTTGTTGAAATCGAA---TTCACGGTTGGGGC 91995 Query 146618 TGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGC 146677 |||| | ||| | ||||| || |||| || || ||||| ||| || ||| Sbjct 91996 CGACGAAGCGGTTCAACGCGATCGACGCCAGATTGCAGACGGCGACCTCATCAGGCGCGC 92055 Query 146678 AATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGT 146737 || | || ||||||| ||| |||||||| || ||||| | || | || | ||||| Sbjct 92056 TGTATTCGACGATCTCGGTGCACAGGTTGCTACATTTGATCGTTCCGAGGTTCTGTTGGT 92115 Query 146738 TACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGAC 146792 | || ||| |||||||| || ||||||| |||||| || |||||||| || Sbjct 92116 TGCT---CTTACGGTTGCAGGCATCTTTGTAGACCATGTAGGGCGTGCCGGTTTCAAC 92170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475495212865600