Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq585 89.7 6e-13 seq319 89.7 6e-13 seq491 82.4 9e-11 >seq585 Length=222271 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || | || || ||||| |||||||| ||||| ||||| ||| | |||||| Sbjct 95189 AGCAAAATCGCGATGAAGGCCCTCATCACGGGAAATGAGCTCATTGGAGTGGGTCAGACC 95248 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| || | ||| | |||||| || || ||| || || ||||||||| Sbjct 95249 GGGCATGAGACCGCGTTCCTTAAGCCAGAAGATGGCCGCAAAGGACCCGCTGAAGAAGAT 95308 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 ||||| || ||||| || | | || ||| | ||||| Sbjct 95309 GCCCTCGACGGCGGCGAAGGCGATGACCCGTTCGCCGAAGGA 95350 >seq319 Length=516904 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || | || || ||||| |||||||||||||| ||||| ||| | |||||| Sbjct 271833 AGCAAAGTCGCGATGAAGGCCCTCATCACGGGAGATGAGCTCATTGGAGTGGGTCAGACC 271892 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| || | ||| | |||||| || || || || || ||||||||| Sbjct 271893 GGGCATGAGACCGCGTTCCTTGAGCCAGAAGATGGCTGCGAAGGACCCGCTGAAGAAGAT 271952 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 ||||| || ||||| || | | || ||| | ||||| Sbjct 271953 GCCCTCGACGGCGGCGAAAGCGATGACCCGTTCGCCGAAGGA 271994 >seq491 Length=111361 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 176818 CTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAAC 176877 ||| || || || ||||| ||||| ||| |||| ||||| | ||||| || || || || Sbjct 65715 CTTACCACGAAGCGGGAAGACACCATAGCGATCGCGACCGATGACAGACAGGCCTGCGAC 65656 Query 176878 TGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACA 176922 ||||||||||| ||||| || || || |||| ||| ||||| || Sbjct 65655 GGCGAGGGTCTTGGCGGAGTCTCCTTCGGTCAGGATTAGCGTGCA 65611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499991290400