Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq97 132 8e-26 seq585 129 9e-25 seq319 127 3e-24 seq594 84.2 3e-11 >seq97 Length=72787 Score = 132 bits (146), Expect = 8e-26 Identities = 334/502 (67%), Gaps = 12/502 (2%) Strand=Plus/Minus Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943 || ||||| |||||||||| ||| | ||| || | | || | | ||||||||| | Sbjct 69887 TCGACGATTTCGGTGCACAGGTTGCTGCATTTGATCGTTCCGAGGTTCTGCTGGTTGCTC 69828 Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGC 205003 || ||||| |||| ||| ||||| | |||| | || | || | || | |||| ||| Sbjct 69827 TTACGGTTGCAGGCGTCTTTGTAAAGCATGTAGGGGGTGCCAGTTTCGACTTGAG--CGC 69770 Query 205004 AGA--ATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATCCCT-TGAGAC 205060 || ||||| |||| | |||||||||| | ||||| || | | | | | ||| Sbjct 69769 TGATGATGTGCTTCCAGAGATCGCGAGCCTTGATCTGCTTT-CGGAAACGCTTCTCCGAC 69711 Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACAT 205120 |||||||| ||||| ||| || | || | || | |||| || || || || Sbjct 69710 TCGTATTTCGTGTAGAGCTCCTCGAACTTCTCGCCCCAGCAGTCCTCAAGACCGGGGCAC 69651 Query 205121 TTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCG 205180 | | ||| |||||||||||||| | ||| || ||| | || ||| || || ||| Sbjct 69650 TCGTGGGGGCACATCAGAGACCAGGTGCCGTCGGTTTCCACGCGCTTCATGAAAAGATCG 69591 Query 205181 CTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTT 205240 |||||| || | || || ||||||||||| | | | || | ||| | ||||| Sbjct 69590 GGGATCCAGAGAGCATAGAAGAGATCACGGGCACGCTCTTCCTCAGCACCACGATTCTTC 69531 Query 205241 TTCAAGTCCAGCCAAGCCGCAA---TGTCGGCGTGCCACGGCTCTAACCACACGGCCATT 205297 |||| |||| || ||| |||| ||||||||||| || | | | ||| | Sbjct 69530 TTCATATCCATGA---CCTCAAAGATGTCTGCGTGCCACGGTTCGAGGTAGATGGCGAAA 69474 Query 205298 GCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGC 205357 ||||| || | |||||| || ||||| || || ||||| | |||||| || || Sbjct 69473 GCGCCAGGACGCTTGTTTCCGCCCTGATCGACGTAGCGAGCAGTGTTGTTGAATACACGG 69414 Query 205358 AGCATCGGCACCAGACCGTTGG 205379 |||||||| || || || |||| Sbjct 69413 AGCATCGGGACAAGGCCATTGG 69392 >seq585 Length=222271 Score = 129 bits (142), Expect = 9e-25 Identities = 239/343 (70%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 203990 TGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTC 204048 || || ||||| ||| || ||||| |||||||| | ||| ||| |||||| ||||| Sbjct 91251 TGATCAATGAA-GGCTCCACGATCGGCGGCCATCTCGATGATGTCCTTCTGACGGATCTC 91309 Query 204049 CCACACCGTCTTGAACACGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCG 204107 ||| || |||||| ||| || || ||| | || | || | | || ||| | || Sbjct 91310 CCAGACAGTCTTGTACAGCTCCTTGATGTAGTCTGGGATGCCT-CGGATGTTCTGCACCG 91368 Query 204108 AGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCA 204167 |||| || |||| ||||| || || || | || || ||| | | ||| || | Sbjct 91369 AGCCACTGGCGGCGATCAGGCTGTTCTTCATGTCTTCATTCCAGAGGTTCAAATCGACAA 91428 Query 204168 GCTCCCGCACCAGGTGGGGGTTGATGATCTG-AAAGTCTCCGGACAGCACCCCTCGGGTG 204226 | ||| || ||| || || || | ||| || ||||| ||||| || || | |||||| Sbjct 91429 GGTCCTTCAGCAGATGCGGATTCACGATTTGGAAAGTG-CCGGAAAGGACTCGACGGGTG 91487 Query 204227 AACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTG 204286 ||| |||| || | || |||| | ||||||||||||| |||||| |||||| Sbjct 91488 TACACATTGTCGGCATAGGGCTCGATGGATTCGTTGTTGCCGAGAATCTGCGCGGTGGAA 91547 Query 204287 GCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGT 204329 ||||| |||||||| || | ||| || |||||||| ||||||| Sbjct 91548 GCCGTCGGCATGGGGGCGACGAGGAGCGAGTTGCGGACACCGT 91590 Score = 100 bits (110), Expect = 5e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 159910 CTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTT 159969 ||| |||| |||||| ||||| |||| || || ||||| || || || |||| ||| || Sbjct 95174 CTTGAACATGAGGCAAGCAAAATCGCGATGAAGGCCCTCATCACGGGAAATGAGCTCATT 95233 Query 159970 GGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC 160029 ||| | | || || ||||||| || || || ||||| || ||||||||||| | Sbjct 95234 GGAGTGGGTCAGACCGGGCATGAGACCGCGTTCCTTAAGCCAGAAGATGGCCGCAAAGGA 95293 Query 160030 ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGC 160089 ||||| || ||||| ||||| ||||| || || || | || || || || || || || Sbjct 95294 CCCGCTGAAGAAGATGCCCTCGACGGCGGCGAAGGCGATGACCCGTTCGCCGAAGGACGC 95353 Score = 96.9 bits (106), Expect = 6e-15 Identities = 341/532 (64%), Gaps = 3/532 (1%) Strand=Plus/Plus Query 204845 GCCAGATTGCACACCGCGGGTCTGTGTGGCTCGCTCACCTCCACGATCTCGGTGCACAAG 204904 ||||||||||| || ||| | ||| |||| || |||||||||||||||| | Sbjct 92022 GCCAGATTGCAGACGGCGACCTCATCAGGCGCGCTGTATTCGACGATCTCGGTGCACAGG 92081 Query 204905 TTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTG 204964 || | || || | | || | | ||| ||||| ||| ||||| |||| || ||| Sbjct 92082 TTGCTACATTTGATCGTTCCGAGGTTCTGTTGGTTGCTCTTACGGTTGCAGGCATCTTTG 92141 Query 204965 TACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCG 205024 || | |||| | ||| | ||| | || | ||||| | | |||||| |||| | || Sbjct 92142 TAGACCATGTAGGGCGTGCCGGTTTCAACTTGAGAGCCGACAATGTGCTTCCAAAGGTCA 92201 Query 205025 CGAGCCTCCACTTGCTTCACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACA 205084 || || ||||| ||| | || ||||||||||| ||||| ||| | || Sbjct 92202 CGGGCAAGGACTTGACGACGGTAGCGCTTTTCGGACTCGTATTTGGTGTAGAGCTGCTCA 92261 Query 205085 AAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCAC 205144 || || || | ||| || || ||||| | | ||| |||||||| ||||| Sbjct 92262 AACTCCTCGCCCCAGCAATCCTCGAGACCAGGACACTCATGGGGGCACATCAGGGACCAG 92321 Query 205145 ATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGA 205204 | ||| || || | || ||| || || ||| |||||| ||| |||| || || Sbjct 92322 GTTCCGTCGGTTTCGACGCGCTTCATGAAGAGATCGGGGATCCAGAGGGCGTAGAAGAGG 92381 Query 205205 TCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATG 205264 |||||||| | | | ||| | ||| |||||| || | || || | || | Sbjct 92382 TCACGGGCACGTTCTTCATCGGCACCAGTGTTCTTCTTGAGATCGAGGACTTCGAAAACG 92441 Query 205265 TCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGG 205324 ||||| ||||| ||||| | | ||||| | || || || | | || || || ||| Sbjct 92442 TCGGCATGCCAGGGCTCGAGATAGACGGCAAAGGCACCGGGACGC---TTACCGCCTTGG 92498 Query 205325 TCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGT 205376 | | |||| | | |||||| || || |||||||| || || |||| Sbjct 92499 TTGATGTAACGAGCCGTGTTGTTGAAGACGCGGAGCATCGGGACAAGGCCGT 92550 >seq319 Length=516904 Score = 127 bits (140), Expect = 3e-24 Identities = 301/450 (67%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 159911 TTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTG 159970 || |||| || || |||||||||| || || ||||| || || ||||||| ||| ||| Sbjct 271819 TTGAACATAAGACAAGCAAAGTCGCGATGAAGGCCCTCATCACGGGAGATGAGCTCATTG 271878 Query 159971 GACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA 160030 || | | || || ||||||| || || |||||||| || ||||| || || | Sbjct 271879 GAGTGGGTCAGACCGGGCATGAGACCGCGTTCCTTGAGCCAGAAGATGGCTGCGAAGGAC 271938 Query 160031 CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090 ||||| || ||||| ||||| ||||| || || || | || || || || || || || Sbjct 271939 CCGCTGAAGAAGATGCCCTCGACGGCGGCGAAAGCGATGACCCGTTCGCCGAAGGACGCC 271998 Query 160091 T--TGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGC 160148 | |||| | | |||| ||||| || |||||||| |||| |||| | Sbjct 271999 TCCTGGTTGCT--GATCCATGCGAACGCCCAATCGGCCTTCTTCTTGATGAACGGGAACT 272056 Query 160149 GCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCA 160208 | || |||||| || | || |||||||| | || |||| || |||| Sbjct 272057 CGTAGATGGCGTTGAATAGCAGGTTGCGCTCCTTCTCGTCGGTGATATACGTCTGGATCA 272116 Query 160209 GCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATG 160268 || | |||||||||| ||| | ||||||||||||| || ||| |||||| | Sbjct 272117 GCATGGAGTACATTTGGCTGTGAATGTTTTCGATGGCCACTTGGAAGCCGTAGAAGAACT 272176 Query 160269 TCGCCTCCAGATAC-TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAAC 160327 | |||| | | || || || |||| | ||| | || |||| || | || || | Sbjct 272177 TGGCCT-CGGTGACTTGGACTTCCTTGGAGAAGCGTTCGACCAGGTTTTCGTTGACAATG 272235 Query 160328 CCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357 ||||| | ||||| ||||| ||||||||| Sbjct 272236 CCGTCAGACGCCGCGAAGAAGGCCAACACG 272265 >seq594 Length=51185 Score = 84.2 bits (92), Expect = 3e-11 Identities = 194/287 (68%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 204928 ATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTT 204987 || ||||||||| ||| || || |||| || ||||| | |||| | ||| | || | Sbjct 46148 ATTCTGCTGGTTGCTCTTACGATTGCAGGCATCTTTGTAGACCATGTATGGCGTGCCAGT 46207 Query 204988 CTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACG-T 205046 || || |||| | | ||| ||| |||||| |||| ||| |||||| ||| | Sbjct 46208 TTCGATTTGAGCGCCGACAATATGGTTCCACAGATCGCAAGCACGCACTTGACG-ACGAT 46266 Query 205047 ACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCA 205106 | | || || |||||||| ||||| || || |||| | ||| | ||| Sbjct 46267 AACGCTTTTCGGATTCGTATTTGGTGTAGAGGGCTTCAAACTTCTCACCCCAGCAATCCT 46326 Query 205107 TCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTC 205165 ||||||||||||| | || ||||| || |||||| | | |||| || || | | Sbjct 46327 CAAGCCCTGGACATTCGTGTGGGCACATAAGCGACCACTTACCATTCGT-TTGGACGCGC 46385 Query 205166 TCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGC 205212 | ||| || || ||| ||||||||| |||| ||||||||||||| Sbjct 46386 TTCATGAAAAGATCGGGAATCCACAGGGCGTATGACAGATCACGGGC 46432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795145856926400