Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq806 141 2e-28 seq394 132 1e-25 >seq806 Length=689343 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || ||||| || || ||||| |||| ||||||||| | | ||| Sbjct 392642 CGAAGACGGAGAACGAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTA 392701 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 392702 CGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCT 392761 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || || | ||||| | ||| || || | Sbjct 392762 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATAGTGTCGCTGCCTTCAACCTCGAGG 392821 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || |||||||| || || Sbjct 392822 GTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTG 392859 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || ||||| || || ||||| |||| ||||||||| | | || | |||||| Sbjct 391967 AGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCT 392026 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||||||||| | ||||| ||||| || ||| ||||| || Sbjct 392027 TCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCTTCCTTATCT 392086 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||| ||| |||| |||||||| | ||| || || | ||||| ||| Sbjct 392087 TGAATCTTTGCCTTGACGTTCTCGATGGTGTCTGATCCTTCAACTTCGAGGGTGATAGTC 392146 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||||||||| || || || Sbjct 392147 TTGCCAGTCAAAGTTTTCACGAAGATCTG 392175 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| ||||| | ||| || || |||||||| |||| |||||||||| ||| || Sbjct 391730 CGGAGTCGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCACTCAATGTG 391789 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||| ||||||||||||||||| || || ||| ||| Sbjct 391790 CGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCT 391849 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||| |||| |||||| | ||| || |||| Sbjct 391850 TCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGCCTTCAACTTCCAGG 391909 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || || || || || || || || Sbjct 391910 GTGATCGTCTTGCCAGTAAGGGTCTTGACGAAGATCTG 391947 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || | |||||| || || ||||| |||| |||||| || ||| || Sbjct 392414 CGAAGTCGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGCTCAATGTG 392473 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||||||||| ||||| |||||||||||| || ||| Sbjct 392474 CGGCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGAGGGATGCCT 392533 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| ||| ||||| |||||| | ||| || || | Sbjct 392534 TCCTTATCTTGAATCTTAGCCTTGACGTTTTCGATGGTGTCGCTGCCTTCAACTTCGAGG 392593 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || ||||| || || Sbjct 392594 GTGATAGTCTTTCCGGTAAGGGTCTTGACAAAGATCTG 392631 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| | |||||| || || ||||| || | ||||||||| | | || | || Sbjct 392191 TCTGAGGACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCC 392250 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| |||||||| ||||||||||||||||||||||| || || ||| ||||| Sbjct 392251 ATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATACCTTCCTT 392310 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || |||||||| ||| ||| || | |||||||| || || || | ||||| Sbjct 392311 GTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAACCCTCAACTTCAAGGGTGAT 392370 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || || || || || Sbjct 392371 GGTCTTTCCGGTAAGGGTCTTGACGAAGATCTG 392403 >seq394 Length=505719 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || ||||| ||||||||||| |||| ||||||||| | || Sbjct 9210 CGAAGACGGAGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTG 9269 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| ||||||||||||||||| |||||||| || ||| ||| Sbjct 9270 CGACCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATGCCT 9329 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| |||| |||||| | ||| || ||||| Sbjct 9330 TCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGCCTTCGACTTCCAAA 9389 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || || || || || Sbjct 9390 GTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTG 9427 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || || ||||| |||| ||||||||| | ||| || | |||||| Sbjct 8991 AGGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCT 9050 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||||||| |||||||| | ||||||||||| || ||| ||||| ||| Sbjct 9051 TCCAACTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCTTCCTTATCC 9110 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | ||| || || | ||||| ||| Sbjct 9111 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGCCTTCGACCTCAAGGGTGATGGTC 9170 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 9171 TTGCCAGTGAGGGTCTTGACGAAGATCTG 9199 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | |||||| || || ||||| |||| ||||||||| | |||||| | || Sbjct 9443 TCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCC 9502 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| || |||||||| ||||||||||||||||| ||||| || || || ||||| Sbjct 9503 ATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGGATACCTTCCTT 9562 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| ||||| ||| ||| || | ||||| | ||| || || | ||||| Sbjct 9563 ATCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCGCTGCCTTCGACTTCGAGGGTGAT 9622 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || ||||| || || || || || || Sbjct 9623 CGTCTTGCCGGTGAGGGTCTTGACGAAGATCTG 9655 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || || || || |||||||||| ||||||||| | || | |||||| Sbjct 8535 AGGACGAGATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCT 8594 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| ||||| |||||||| || ||| ||||| || Sbjct 8595 TCAAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 8654 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| ||| | |||||| | ||| || || | || |||||| Sbjct 8655 TGGATCTTGGCCTTGACGTTTTCAATGGTGTCGCTGCCTTCGACTTCGAGGGTAATCGTC 8714 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || ||||| Sbjct 8715 TTGCCGGTGAGGGTCTTGACGAAGATTTG 8743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178907401362980