Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq806 129 7e-25 seq394 114 1e-20 >seq806 Length=689343 Score = 129 bits (142), Expect = 7e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| ||||| || | || || |||||||| |||||||| Sbjct 392672 TCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAG 392731 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||| | || | || ||||||||| |||||| ||||| || Sbjct 392732 ATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTC 392791 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||||| ||| || || | |||||||| ||||| || || || || ||| Sbjct 392792 TCAATAGTGTCGCTGCCTTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACA 392851 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 392852 AAGATCTGCAT 392862 Score = 105 bits (116), Expect = 8e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| ||||| ||||| ||||||||||| || || || | || || Sbjct 391970 ACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCA 392029 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| |||||||| ||||||||||| ||||| | || | || ||||| || Sbjct 392030 AGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCTTCCTTATCTTGA 392089 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC-GCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| || | | ||||| | || ||| || || | ||||| || || Sbjct 392090 ATCTTTGCCTTGACGTTCTCGATGGTGTCTGATC-CTTCAACTTCGAGGGTGATAGTCTT 392148 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| ||||| || ||||| ||||| Sbjct 392149 GCCAGTCAAAGTTTTCACGAAGATCTGCAT 392178 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | ||||| | || ||||||||||||||||| || Sbjct 391759 CTCCTTCTGGATGTTGTAGTCACTCAATGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 391818 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | || ||||||||| |||||| || | | Sbjct 391819 GATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATT 391878 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||||| ||| || |||| ||||| || ||||| || || || || || Sbjct 391879 CTCGATGGTGTCGCTGCCTTCAACTTCCAGGGTGATCGTCTTGCCAGTAAGGGTCTTGAC 391938 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 391939 GAAGATCTGCAT 391950 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| ||| | ||||| | || |||||||||||||||||||| Sbjct 392444 TCCTTCTGGATGTTGTAATCGCTCAATGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 392503 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || |||||||| | || | || ||||| || ||||| ||||| | Sbjct 392504 ATAAGACGTTGCTGGTCCGGAGGGATGCCTTCCTTATCTTGAATCTTAGCCTTGACGTTT 392563 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||||| ||| || || | ||||| || || || || || || || ||| Sbjct 392564 TCGATGGTGTCGCTGCCTTCAACTTCGAGGGTGATAGTCTTTCCGGTAAGGGTCTTGACA 392623 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 392624 AAGATCTGCAT 392634 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||||||||| || ||||| | || || ||||||||||||||||| Sbjct 392216 TCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAG 392275 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||||| || | || | | |||||||| ||||| ||||| || Sbjct 392276 ATGAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTAGCCTTGACGTTC 392335 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || || || | |||||||| || || || || || || || Sbjct 392336 TCAATGGTGTCTGAACCCTCAACTTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACG 392395 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 392396 AAGATCTGCAT 392406 >seq394 Length=505719 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || || || | || |||||||||||||| ||||| Sbjct 9980 TCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAG 10039 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| |||||||| || | || | || ||||| ||| |||||| ||||| | Sbjct 10040 ATCAAACGCTGCTGATCCGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTT 10099 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| || || || | |||||||| || |||||||| || || || Sbjct 10100 TCGATGGTGTCGGAGCCCTCAACCTCGAGGGTGATGGTCTTTCCCGTCAGGGTCTTGACG 10159 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 10160 AAGATTTGCAT 10170 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| | || || | || || | |||||| || ||||| Sbjct 9012 TCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCTTCCAACTGCTTTCCAGCGAAG 9071 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||||||||||||||| | || | | ||||| ||| |||||| ||||| || Sbjct 9072 ATCAAGCGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTC 9131 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||||| ||| || || | |||||||| ||||| || || || || || Sbjct 9132 TCGATGGTGTCGCTGCCTTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACG 9191 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 9192 AAGATCTGCAT 9202 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | || | |||||||| || | || ||||| ||||| |||||||||| Sbjct 9430 TGCCACCGCGCAATCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 9489 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | |||||| | || |||||||||||||||||||| || | || ||||| || | | Sbjct 9490 ACAAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGG 9549 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||| ||| |||||| ||||| || | | |||||||| ||| | Sbjct 9550 GGATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCGCTGCCTTCGA 9609 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | ||||| || ||||| || || || || || ||||| ||||| Sbjct 9610 CTTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 9658 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| ||||||||||| ||||||||| || ||||| | || || Sbjct 8538 ACGAGATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCTTCA 8597 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| || | || |||||||| | || | || |||||||| | Sbjct 8598 AGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 8657 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | |||||||| ||| || || | || || || ||| Sbjct 8658 ATCTTGGCCTTGACGTTTTCAATGGTGTCGCTGCCTTCGACTTCGAGGGTAATCGTCTTG 8717 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||||||||| Sbjct 8718 CCGGTGAGGGTCTTGACGAAGATTTGCAT 8746 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||||| | ||| || |||| |||||||||||||||||||| Sbjct 8784 TCCTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAA 8843 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || |||||||| | || | | |||||||| |||||| ||||| | Sbjct 8844 ATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTT 8903 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| || || || | ||||| || ||||| |||| || || ||| Sbjct 8904 TCGATGGTGTCGGAACCCTCAACTTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACA 8963 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 8964 AAGATCTGCAT 8974 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| | || || ||||||||||||||||| Sbjct 9239 CTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAA 9298 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||| | || | || |||||||| |||||| ||||| | Sbjct 9299 GATGAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 9358 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| ||| || |||| ||||| || ||||| |||| || || || Sbjct 9359 CTCGATGGTGTCGGAGCCTTCGACTTCCAAAGTGATAGTCTTGCCAGTCAAGGTCTTGAC 9418 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 9419 GAAGATCTGCAT 9430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565231758448800