Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq594 113 5e-20 seq585 100 3e-16 >seq594 Length=51185 Score = 113 bits (124), Expect = 5e-20 Identities = 246/364 (68%), Gaps = 6/364 (2%) Strand=Plus/Plus Query 106460 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519 || ||||| ||||||| |||| | || || || ||||| | |||| || | ||| Sbjct 46053 AGCGCGATCGATGCCAGATTGGAGACTGCGGTTTCATCAGAGGCACTGTATTCAACGATT 46112 Query 106520 TCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTG 106579 |||| |||| || | || || || || | ||||| ||||| ||||| ||| Sbjct 46113 CCTGTGCACACACTGCTGCCTTTGATAGTTCCGAGATTCTGCTGGTTGCTCTTACGATTG 46172 Query 106580 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCC 106639 || ||||| ||||||| |||||| ||||| || || || | || | || ||| Sbjct 46173 CAGGCATCTTTGTAGACCATGTATGGCGTGCCAGTTTCGATTTGAGCGCCGACAATATGG 46232 Query 106640 TTCCACACATCGGCGGCTGGTACA--ATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTG 106697 ||||||| |||| || | || | | || | | | | || | ||||| || | Sbjct 46233 TTCCACAGATCGCAAGCACGCACTTGACGACGATAACGCTTT--TCGGATTCGTATTTGG 46290 Query 106698 TGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGA 106756 |||||||||||||||||| ||||||| | || || || ||||| | || ||| Sbjct 46291 TGTAGAGGGCTTCAAACTTCTCACCC-CAGCAATCCTCAAGCCCTGGACATTCGTGTGGG 46349 Query 106757 CAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 106816 || | ||| ||||| | |||| | | || |||||||||||||| || ||||||||| Sbjct 46350 CACATAAGCGACCACTTACCATTCGTTTGGACGCGCTTCATGAAAAGATCGGGAATCCAC 46409 Query 106817 AGGG 106820 |||| Sbjct 46410 AGGG 46413 >seq585 Length=222271 Score = 100 bits (110), Expect = 3e-16 Identities = 485/763 (64%), Gaps = 14/763 (2%) Strand=Plus/Plus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 ||||| || |||| |||||| || || |||||| | |||| || | || || Sbjct 92013 GCGATCGACGCCAGATTGCAGACGGCGACCTCATCAGGCGCGCTGTATTCGACGATCTCG 92072 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || |||| |||| || || ||||| || | |||| |||||| ||||| |||||| Sbjct 92073 GTGCACAGGTTGCTACATTTGATCGTTCCGAGGTTCTGTTGGTTGCTCTTACGGTTGCAG 92132 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 ||||| ||||||| |||||||||||| || || || || || || ||| |||| Sbjct 92133 GCATCTTTGTAGACCATGTAGGGCGTGCCGGTTTCAACTTGAGAGCCGACAATGTGCTTC 92192 Query 106643 CACACATCGGCGGCTGGTAC--AATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGT 106700 || | || ||| | || | | || | || | | || | |||||| || |||| Sbjct 92193 CAAAGGTCACGGGCAAGGACTTGACGACGGTAGCGCTT--TTCGGACTCGTATTTGGTGT 92250 Query 106701 AGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAG 106759 |||| ||||||||||| ||| | || || |||||| || || | || || Sbjct 92251 AGAGCTGCTCAAACTCCTCGCCC-CAGCAATCCTCGAGACCAGGACACTCATGGGGGCAC 92309 Query 106760 AAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 106819 | || ||||| || | || || ||||||||||| || || || ||||| ||| Sbjct 92310 ATCAGGGACCAGGTTCCGTCGGTTTCGACGCGCTTCATGAAGAGATCGGGGATCCAGAGG 92369 Query 106820 GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAG 106878 | | ||||| || | || | || ||| |||| ||| || | | || || Sbjct 92370 GCGTAGAAGAGGTCACGGGCACGTTCTTCATCGGCACCAGTGTT-CTTCTTGAGATCGAG 92428 Query 106879 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACG 106938 || || | | || || ||||| ||||| |||||||| || | | || |||| Sbjct 92429 GACTTCGAAAACGTCGGCATGCCAGGGCTCGAGATAGACGGCAAAGGCACC---GGGACG 92485 Query 106939 C---CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 106995 | || |||| || | || || || ||| ||| || ||||| ||||| || | || Sbjct 92486 CTTACCGCCTTGGTTGATGTAACGAGCCGTGTTGTTGAAGACGCGGAGCATCGGGACAAG 92545 Query 106996 ACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGAT 107055 || | || ||| || || | ||| | | ||| | | | |||| Sbjct 92546 GCCGTGCGAGATGCCACCAGTGCCAGCGACACGGGTTCCGGCGGCACGGATGTTGTGGAC 92605 Query 107056 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 107115 || || || || || ||||| |||| ||| | ||||||| | | || || | | Sbjct 92606 GTTGATGCCGATGCCACCAGCGGACTTGCTGATGCGAGCACACTGCTTCAGGGTGTCGAA 92665 Query 107116 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 107175 ||| || | | |||||||| ||| | |||||||| |||||||| || | Sbjct 92666 GATGCCTTCAACGGAGTCCTCTGACATGGTCAACAGGAAGCAGGACGACATCTGAGGCCG 92725 Query 107176 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 || ||||| |||||||| || || || || || ||| ||||| Sbjct 92726 AGGGGTACCCGCATTGAACAGTGTGGGCGTGGCATGAGTGAAC 92768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589973867725600