Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq806 179 8e-40 seq394 170 4e-37 seq793 84.2 5e-11 >seq806 Length=689343 Score = 179 bits (198), Expect = 8e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || ||||| || || || || ||||| |||| || || | |||||||| Sbjct 391970 ACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCA 392029 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || ||||||||||| ||||||||||| || |||||| Sbjct 392030 AGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCTTCCTTATCTTGA 392089 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| |||||||||||| |||||||| || | ||| ||||| ||||| | ||||| Sbjct 392090 ATCTTTGCCTTGACGTTCTCGATGGTGTCTGATCCTTCAACTTCGAGGGTGATAGTCTTG 392149 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||||||| ||||| | ||||| Sbjct 392150 CCAGTCAAAGTTTTCACGAAGATCTGCAT 392178 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || || || || ||||| ||||| |||| || || | |||||||| ||||| Sbjct 392203 GTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTG 392262 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||| ||||| ||||| ||||||||||| || Sbjct 392263 CTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTT 392322 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||||||||||||||| |||| || ||||||||||| | |||||||| || Sbjct 392323 AGCCTTGACGTTCTCAATGGTGTCTGAACCCTCAACTTCAAGGGTGATGGTCTTTCCGGT 392382 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 392383 AAGGGTCTTGACGAAGATCTGCAT 392406 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | ||| | ||| || || || || || || || ||||||||| | || | Sbjct 392417 AGTCGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGCTCAATGTGCGG 392476 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| ||||||||||| || ||||||||||| ||||| ||||| ||||| |||||||| Sbjct 392477 CCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGAGGGATGCCTTCC 392536 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || |||||||| || ||||||||| || |||||||| | ||| ||||| ||||| Sbjct 392537 TTATCTTGAATCTTAGCCTTGACGTTTTCGATGGTGTCGCTGCCTTCAACTTCGAGGGTG 392596 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||||| || | || || || || | ||||| Sbjct 392597 ATAGTCTTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 392634 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || || ||||| || || || || ||||| |||| |||||| | |||||||| Sbjct 392653 AACGAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTC 392712 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || || || ||||| || ||||||||||| ||||| || Sbjct 392713 AAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTG 392772 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||| |||||||| ||||| | ||| || || ||||| | ||||| Sbjct 392773 GATCTTGGCCTTGACATTCTCAATAGTGTCGCTGCCTTCAACCTCGAGGGTGATGGTCTT 392832 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 392833 GCCAGTGAGGGTCTTCACAAAGATCTGCAT 392862 Score = 116 bits (128), Expect = 8e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| || || || ||||| || | || | ||||| |||||||| Sbjct 391747 GTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCACTCAATGTGCGGCCATCCTCGAGCTG 391806 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || || || || ||||| ||||||||||| ||||| || || || Sbjct 391807 CTTGCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTT 391866 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || ||||| |||||||| | ||| ||||| ||||| | |||||| || || Sbjct 391867 GGCTTTCACATTCTCGATGGTGTCGCTGCCTTCAACTTCCAGGGTGATCGTCTTGCCAGT 391926 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 391927 AAGGGTCTTGACGAAGATCTGCAT 391950 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| || || || || || ||||| |||||||| |||||||| || || Sbjct 393005 CTTACCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTT 393064 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || ||||||||||| || | ||| || |||||||| | ||||| || || Sbjct 393065 GGCCTTGACATTTTCAATGGTGTCTGAGCCTTCAACCTCAAGGGTGATGGTCTTGCCGGT 393124 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | ||||| Sbjct 393125 AAGAGTCTTGACGAAGATCTGCAT 393148 >seq394 Length=505719 Score = 170 bits (188), Expect = 4e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || || || ||||| || ||||| ||| || || | |||||||| Sbjct 8538 ACGAGATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCTTCA 8597 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| ||||| |||||||| ||||||||||| |||||||| Sbjct 8598 AGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 8657 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||||||||| | ||| ||||| ||||||| |||||| Sbjct 8658 ATCTTGGCCTTGACGTTTTCAATGGTGTCGCTGCCTTCGACTTCGAGGGTAATCGTCTTG 8717 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 8718 CCGGTGAGGGTCTTGACGAAGATTTGCAT 8746 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||| || || || ||||| ||| || || | |||||||| Sbjct 9222 ACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCTTCA 9281 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || ||||| |||||||| ||||||||||| |||||||| Sbjct 9282 AGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 9341 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||| |||||||| || | ||| ||||| | || | ||||| Sbjct 9342 ATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGCCTTCGACTTCCAAAGTGATAGTCTTG 9401 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 9402 CCAGTCAAGGTCTTGACGAAGATCTGCAT 9430 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || || || ||||| || ||||| |||| | ||| | || ||||||||||| Sbjct 8771 GTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTCTTCGAGCTG 8830 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || || ||||| |||||||| || || ||||| |||||||| || || Sbjct 8831 CTTGCCGGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTT 8890 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || |||||||| |||| || ||||||||||| | ||||| || || Sbjct 8891 GGCCTTGACGTTTTCGATGGTGTCGGAACCCTCAACTTCAAGGGTGATAGTCTTGCCAGT 8950 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || | ||||| Sbjct 8951 CAAGGTCTTGACAAAGATCTGCAT 8974 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 |||||| || | ||| || ||||| || || || || ||||| |||| | ||| | || Sbjct 9443 TCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCC 9502 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 ||| ||||||||||| || |||||||| || ||||| || ||||| || || ||||| || Sbjct 9503 ATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGGATACCTTCCTT 9562 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 || || || || ||||||||||||||| ||||| | ||| ||||| ||||| | Sbjct 9563 ATCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCGCTGCCTTCGACTTCGAGGGTGAT 9622 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| || || | || || ||||| | ||||| Sbjct 9623 CGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 9658 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| ||||| || || || || ||||| |||| || || | ||||| |||||||| Sbjct 9967 GTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCGAGCTG 10026 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || || || || ||||||||||| || || || || || Sbjct 10027 CTTGCCAGCGAAGATCAAACGCTGCTGATCCGGGGGAATGCCTTCCTTATCCTGGATCTT 10086 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || |||||||| || | || || || ||||| | |||||||| || Sbjct 10087 GGCCTTGACATTTTCGATGGTGTCGGAGCCCTCAACCTCGAGGGTGATGGTCTTTCCCGT 10146 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | |||||| Sbjct 10147 CAGGGTCTTGACGAAGATTTGCAT 10170 Score = 120 bits (132), Expect = 7e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| || || || || || || || ||||| |||| |||| || | |||||||| | || Sbjct 8999 GTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAG-GTACGGCCATCTTCCAACT 9057 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || |||||||| | || || |||||||| ||||| ||||| || || || || | Sbjct 9058 GCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCT 9117 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | |||||||||||| |||||||| | ||| || |||||||| | ||||| || | Sbjct 9118 TGGCCTTGACGTTCTCGATGGTGTCGCTGCCTTCGACCTCAAGGGTGATGGTCTTGCCAG 9177 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 | | || || ||||| | ||||| Sbjct 9178 TGAGGGTCTTGACGAAGATCTGCAT 9202 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||| ||||| ||||| |||||||| ||||||||||| |||||||| || || Sbjct 9799 CTTACCGGCGAAAATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTT 9858 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || |||||||| || | ||| ||||| | || | ||||| || || Sbjct 9859 GGCCTTGACGTTTTCGATGGTGTCAGAGCCTTCGACTTCCAAAGTGATGGTCTTGCCGGT 9918 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 9919 GAGGGTCTTGACGAAGATCTGCAT 9942 >seq793 Length=17056 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| | ||||| || || || ||||||||||| || || || || || Sbjct 5317 CTTACCAGCGAAGATCAAACGTTGCTGATCCGGGGGAATGCCTTCCTTATCCTGGATCTT 5376 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || |||||||| || || || |||||||| | ||||| || || Sbjct 5377 GGCCTTGACATTTTCGATGGTGTCAGAGGCCTCAACCTCAAGGGTGATGGTCTTGCCGGT 5436 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 5437 GAGGGTCTTGACGAAGATCTGCAT 5460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109468237680980