Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq806 114 8e-21 seq394 104 2e-17 >seq806 Length=689343 Score = 114 bits (126), Expect = 8e-21 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| ||||| | || |||| || ||||| |||||||| || Sbjct 392671 TTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCAAGCTGCTTTCCGGCGAA 392730 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | || |||||||| ||||| ||||| | Sbjct 392731 GATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--A 392788 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || | | | ||||| |||| ||| ||||| || || ||||| |||||| Sbjct 392789 TTCTCAATAGTGTCGCTGCCTTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTC 392848 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 392849 ACAAAGATCTGCAT 392862 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||| || | |||||||| | || ||| ||||||||||| ||||| || Sbjct 392180 CCGCCGCGCAATCTGAGGACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCGGAG 392239 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || ||||| || ||||| || || || || ||||| ||| | || Sbjct 392240 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 392299 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| |||||| |||||| | || | || ||||||| Sbjct 392300 ATACCTTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAACCCTCAACT 392359 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| ||||| || || ||||| || ||||||||||| Sbjct 392360 TCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 392406 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCAT 34830 ||||||||| | || ||| ||||| ||||| || || | || | | || |||| | Sbjct 392425 AACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGCTCAATG-TGCGGCCATCCT 392483 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | ||||| || ||||| || || || ||||||||||| | || | || ||||| || Sbjct 392484 CGAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGAGGGATGCCTTCCTTATCTT 392543 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| |||||| | | || | || | | | ||||| |||| ||| || || | Sbjct 392544 GAATCTTAGCCTTGACGTTTTCGATGGTGTCGCTGCCTTCAACTTCGAGGGTGATAGTCT 392603 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || || ||||| |||||||||||||| Sbjct 392604 TTCCGGTAAGGGTCTTGACAAAGATCTGCAT 392634 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 34784 TGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCC 34843 |||| ||| ||||| ||||| ||||| || ||| | || |||| || ||||| ||||| Sbjct 391981 TGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCAAGCTGCTTTCC 392040 Query 34844 GGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTT 34903 ||| || || | || || |||||| | || | || ||||| || |||||| || Sbjct 392041 GGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCTTCCTTATCTTGAATCTTTGCCTT 392100 Query 34904 GACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGT 34963 |||| | || | || | ||||| |||| ||| || || || || || | ||| Sbjct 392101 GACGTTCTCGATGGTGTCTGATCCTTCAACTTCGAGGGTGATAGTCTTGCCAGTCAAAGT 392160 Query 34964 CTTCACAAAGATCTGCAT 34981 ||||| ||||||||||| Sbjct 392161 TTTCACGAAGATCTGCAT 392178 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831 |||||||||| || || ||||| ||||| ||||| | || | | || |||| || Sbjct 391742 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCACTCAATG-TGCGGCCATCCTC 391800 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || |||||||| || || || ||||| ||| | || | || |||||||| Sbjct 391801 GAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTG 391860 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||| || || || || | || | | | ||||| || | ||| || || Sbjct 391861 GATCTTGGCTTTCAC--ATTCTCGATGGTGTCGCTGCCTTCAACTTCCAGGGTGATCGTC 391918 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || ||||| || ||||||||||| Sbjct 391919 TTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 391950 >seq394 Length=505719 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||| ||||| |||||||| | ||| ||| ||||| ||||| ||||| || Sbjct 9432 CCACCGCGCAATCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 9491 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || |||| || ||||| || ||||| || || || |||||||| ||| | || Sbjct 9492 AAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGG 9551 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||||| |||||| | || | || | | | || || Sbjct 9552 ATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCGCTGCCTTCGACT 9611 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||| || || || || ||||| ||||| || ||||||||||| Sbjct 9612 TCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 9658 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || || ||||| ||||| ||| | || |||| || ||||| || ||||| || Sbjct 8555 TTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAA 8614 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || |||||||||||| | || | || |||||||| ||||| |||||| Sbjct 8615 GATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 8674 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || | | | || || |||| ||| || || || || ||||| ||||| || Sbjct 8675 TTCAATGGTGTCGCTGCCTTCGACTTCGAGGGTAATCGTCTTGCCGGTGAGGGTCTTGAC 8734 Query 34970 AAAGATCTGCATA 34982 ||||| |||||| Sbjct 8735 GAAGATTTGCATA 8747 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || ||| ||||| ||||| ||||| || | | | || |||| ||| Sbjct 8994 ACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCTTCC 9053 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||| || || || | || ||||||||| | || | || ||||| || Sbjct 9054 AACTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTGG 9113 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | | | || || || | ||| ||||| || Sbjct 9114 ATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGCCTTCGACCTCAAGGGTGATGGTCTTG 9173 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| ||||| || |||||||||||| Sbjct 9174 CCAGTGAGGGTCTTGACGAAGATCTGCATA 9203 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | |||||| | |||||||| | || ||| || || ||||| ||||| || Sbjct 8748 CCACCACGCAACCTGAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAC 8807 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || | || || ||||| || ||||| || || || |||||||||||| | || Sbjct 8808 AAAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGCTGGTCTGGGGGG 8867 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| |||||| | | || | || ||||||| Sbjct 8868 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGAACCCTCAACT 8927 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || || || || || | ||||| |||||||||||||| Sbjct 8928 TCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 8974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629880916320