Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq850 150 1e-30 seq394 93.3 3e-13 seq575 91.5 1e-12 seq806 87.8 1e-11 >seq850 Length=631688 Score = 150 bits (166), Expect = 1e-30 Identities = 366/552 (66%), Gaps = 7/552 (1%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||||| ||||| || | || ||||||||| ||||| || || | || || || || Sbjct 26557 AGCTATTGGTATCGACCTCGGTACCACATATTCCTGTGTCGGCGTCTATCAGAACGGCAA 26616 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| || || || || |||||||| || |||| ||| ||||| ||||| ||||||| Sbjct 26617 AGTGGAGATCATCGCTAATGATCAGGGCAACAAAACGACTCCGAGCTATGTGGCTTTCAC 26676 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 ||| ||||||| |||| |||| || || || || | |||| | | | ||||| || Sbjct 26677 GGATACTGAACGTTTAATTGGAGACGCTGCCAAGGACCAAGTCGCCCGAAATCCGGAAAA 26736 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| || || || || || | | ||||| | || | |||| | || ||||| Sbjct 26737 TACCATCTTCGACGCCAAGAGACTCATTGGCCGCCGTCTCGATGACCCTACAGTTCAACG 26796 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGT---TTCTGGAAAACCTTATATTGA 550287 ||||||| ||||| || | | | || ||||||||| || | || Sbjct 26797 TGATATGACTTTATGGCCATTTAAGGTCATCCCTGGCGCTTCTGGAAAGCCAGCCGTCGA 26856 Query 550288 AGCT--ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTT 550345 || | ||| | || | | ||| || | || ||| |||| || ||||| Sbjct 26857 AGTCGAATTCAAGGGCGAACGG--AAAGTCTTCGCGCCGGAAGAAATCAGCTCCATGGTC 26914 Query 550346 TTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTA 550405 | | ||| ||||| |||| || |||| | || || ||||||| |||| || Sbjct 26915 CTGACGAAGATGAAGGAAACCGCTGAAGCTTACCTCGGACATCCAGTTACGAATGCTGTT 26974 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 | ||||| || || ||||| || || | ||||| ||||| || ||||||||||| Sbjct 26975 GTTACTGTTCCGGCCTATTTCAACGATGCTCAACGCCAAGCGACAAAAGATGCTGGCAAG 27034 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 ||||| || | ||||| ||||| || |||||||| || || || || || || || ||| Sbjct 27035 ATTGCCGGTTTGAATGTCCTTCGCATCATCAATGAGCCCACAGCCGCCGCCCTGGCCTAT 27094 Query 550526 GGACTTGATAAA 550537 || || || ||| Sbjct 27095 GGTCTCGACAAA 27106 >seq394 Length=505719 Score = 93.3 bits (102), Expect = 3e-13 Identities = 160/224 (71%), Gaps = 10/224 (4%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCT-AGAGTT 563313 ||||| || || |||||||||||| ||| ||||| || ||||| || ||| || || Sbjct 8529 AGACGAAGGACGAGATGAAGGGTAGATTCCTTTTGG--ATGTTGTAGTC-GCTGAGGGTG 8585 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||||||| || || ||||| || ||||| | |||||| || || ||||| ||| Sbjct 8586 CGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGAATGCCT 8645 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG--TGAGTACATTCGA 563431 || || ||||| || || || || ||||| || || || | | || ||||| Sbjct 8646 TCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCGCTGCCTTCG-AC-TTCGA 8703 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | |||| || || || || || || || ||||| ||||||||| Sbjct 8704 GGGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATA 8747 >seq575 Length=587570 Score = 91.5 bits (100), Expect = 1e-12 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 550329 AAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAG 550388 |||| ||||| ||||| || || |||||||| |||| ||| || || | || | Sbjct 189253 AAATCTCATCCATGGTCTTGATCAAAATGAAGGAAACCGCCGAAGCCTTCCTCGGCACAA 189194 Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || | || || || | || || || || ||||| || || || || || ||||||| Sbjct 189193 CCGTCAAAGACGCCGTCGTCACAGTCCCCGCCTATTTCAACGATTCTCAGCGCCAAGCTA 189134 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | || ||||| || ||||||||||| || || | | || ||||||||||| || | Sbjct 189133 CAAAGGATGCCGGTGCCATTGCTGGACTCAACGTCTTGAGAATCATCAATGAACCGACGG 189074 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 |||| || | || ||||| || ||||| Sbjct 189073 CTGCCGCCATCGCCTATGGTCTGGATAA 189046 Score = 86.0 bits (94), Expect = 5e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || || || || ||| || ||||| | ||| |||||||| ||| Sbjct 189638 GGAATTGATCTTGGCACGACGTACTCTTGCGTCGGTGTCTTCCAAGGCGGTAAAGTCGAA 189579 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 ||||| || ||||| || || ||| | || ||||||||||||||| | ||||| || || Sbjct 189578 ATTATCGCTAATGACCAGGGCAACCGTACCACTCCATCTTATGTTGCATTCACCGATACA 189519 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 || | | | |||| |||| ||| || |||| Sbjct 189518 GAGCGTATTATTGGCGATGGAGCCAAGAATCA 189487 >seq806 Length=689343 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| || ||||| || || ||| || || ||||| || | || || | Sbjct 391960 GAGACGGAGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACG 392019 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||||||| || |||||||| || || | | || || || || ||||| ||||| Sbjct 392020 GCCATCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCTTC 392079 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGA 563433 ||||||||||| ||| || || ||| || || || || | || |||||| Sbjct 392080 CTTATCTTGAATCTTTGCCTTGACGTTCTCGATGGTGTC--TGATCCTTCAACTTCGAGG 392137 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | ||| || ||||| | |||||| ||||| || ||||| Sbjct 392138 GTGATAGTCTTGCCAGTCAAAGTTTTCACGAAGATCTGCAT 392178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029246288560600