Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq806 131 1e-25 seq394 114 1e-20 seq793 100 2e-16 >seq806 Length=689343 Score = 131 bits (144), Expect = 1e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || ||||| || || || ||||| |||| || || | | |||| || | || Sbjct 391975 ATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCAAGCTG 392034 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || ||||| |||||||| || || ||||||||||| ||||||||||| || Sbjct 392035 CTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCTTCCTTATCTTGAATCTT 392094 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || || | || | ||||| || ||| ||||| || |||| || ||||| || Sbjct 392095 TGCCTTGACGTTCTCGATGGTGTCTGATCCTTCAACTTCGAGGGTGATAGTCTTGCCAGT 392154 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 |||||||| || || ||||||||| Sbjct 392155 CAAAGTTTTCACGAAGATCTGCATG 392179 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||||||||| || || || ||||| |||| || || | | |||| || Sbjct 392198 ACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCA 392257 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || || | |||||| ||||| || ||||| ||||| || |||||| Sbjct 392258 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGA 392317 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| || || |||||||| |||| || || Sbjct 392318 ATCTTAGCCTTGACGTTCTCAATGGTGTCTGAACCCTCAACTTCAAGGGTGATGGTCTTT 392377 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481 ||||| | || || || || ||||||||| ||||||| Sbjct 392378 CCGGTAAGGGTCTTGACGAAGATCTGCATGCCACCGCGAAG 392418 Score = 105 bits (116), Expect = 5e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| || || ||||||||||| || || || ||||||||| | || | | |||| || Sbjct 392425 AACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGCTCAATGTGCGGCCATCCTC 392484 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | ||||| || || || || | ||| || || || || || |||||||| |||||||| Sbjct 392485 GAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGAGGGATGCCTTCCTTATCTTG 392544 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||| || || || |||| | ||||| ||| ||||| || |||| || || Sbjct 392545 AATCTTAGCCTTGACGTTTTCGATGGTGTCGCTGCCTTCAACTTCGAGGGTGATAGTCTT 392604 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 ||||| | || || ||||| ||||||||| |||||||| Sbjct 392605 TCCGGTAAGGGTCTTGACAAAGATCTGCATGCCACCGCGAAGA 392647 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||||||||| || || || || ||||| || | || | | |||| || Sbjct 391742 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCACTCAATGTGCGGCCATCCTCG 391801 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| || | |||||| ||||| || ||||||||||| || || || Sbjct 391802 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 391861 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | ||||| ||| ||||| || |||| ||| ||| Sbjct 391862 ATCTTGGCTTTCACATTCTCGATGGTGTCGCTGCCTTCAACTTCCAGGGTGATCGTCTTG 391921 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | || || || || ||||||||| Sbjct 391922 CCAGTAAGGGTCTTGACGAAGATCTGCATG 391951 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||| || || ||||| || || || ||||| |||| | ||| | | | Sbjct 392647 ACGGAGAACGAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCC 392706 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||||| || || || || | |||||| || || || ||||||||||| || Sbjct 392707 ATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTT 392766 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || ||| | || | |||||| ||| || || || |||| Sbjct 392767 GTCCTGGATCTTGGCCTTGACATTCTCAATAGTGTCGCTGCCTTCAACCTCGAGGGTGAT 392826 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || | || || ||||| ||||||||| Sbjct 392827 GGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 392863 >seq394 Length=505719 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| ||||| || || || ||||| |||| || || | | |||| || Sbjct 9962 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCG 10021 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || ||||||||||| ||||| || Sbjct 10022 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCCGGGGGAATGCCTTCCTTATCCTGG 10081 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| |||| | ||||| || || || || || |||| || || Sbjct 10082 ATCTTGGCCTTGACATTTTCGATGGTGTCGGAGCCCTCAACCTCGAGGGTGATGGTCTTT 10141 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTTACG 101476 || || | || || || || || |||||| ||||| Sbjct 10142 CCCGTCAGGGTCTTGACGAAGATTTGCATGATTACG 10177 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||||||||| ||||| || ||||| |||| | ||| | | | || || Sbjct 8766 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTCTTCG 8825 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || || | ||| || || || || || || ||||| || ||||| Sbjct 8826 AGCTGCTTGCCGGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGG 8885 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || |||| | ||||| || || |||||||| |||| || ||| Sbjct 8886 ATCTTGGCCTTGACGTTTTCGATGGTGTCGGAACCCTCAACTTCAAGGGTGATAGTCTTG 8945 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || || || ||||| ||||||||| Sbjct 8946 CCAGTCAAGGTCTTGACAAAGATCTGCATG 8975 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||||||||| ||||| || ||||| ||| || || | | |||| || | || Sbjct 8543 ATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCTTCAAGCTG 8602 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || || | ||| || || || || ||||||||||| || ||||| || || Sbjct 8603 CTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTT 8662 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || |||| | ||||| ||| ||||| || || | ||| |||||||| Sbjct 8663 GGCCTTGACGTTTTCAATGGTGTCGCTGCCTTCGACTTCGAGGGTAATCGTCTTGCCGGT 8722 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || || || || ||||| Sbjct 8723 GAGGGTCTTGACGAAGATTTGCAT 8746 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || || || || || ||||| ||| || || | |||| || | || Sbjct 9227 ATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCTTCAAGCTG 9286 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || || | ||| || || || || ||||||||||| || ||||| || || Sbjct 9287 CTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTT 9346 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || | ||||| || ||| ||||| | ||||| || ||||| || Sbjct 9347 GGCCTTGACGTTCTCGATGGTGTCGGAGCCTTCGACTTCCAAAGTGATAGTCTTGCCAGT 9406 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 || || || || || ||||||||| Sbjct 9407 CAAGGTCTTGACGAAGATCTGCATG 9431 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || || | ||| || || || || ||||||||||| || ||||| || || Sbjct 9799 CTTACCGGCGAAAATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTT 9858 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || |||| | |||||||| ||| ||||| | ||||| || |||||||| Sbjct 9859 GGCCTTGACGTTTTCGATGGTGTCAGAGCCTTCGACTTCCAAAGTGATGGTCTTGCCGGT 9918 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 9919 GAGGGTCTTGACGAAGATCTGCATG 9943 >seq793 Length=17056 Score = 100 bits (110), Expect = 2e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 |||| |||||| || || |||||||| || ||||| || ||||||||||| ||||| || Sbjct 5311 CAATAACTTACCAGCGAAGATCAAACGTTGCTGATCCGGGGGAATGCCTTCCTTATCCTG 5370 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || || || ||| |||| | |||||||| | || || ||||| |||| || || Sbjct 5371 GATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGCCTCAACCTCAAGGGTGATGGTCTT 5430 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| | || || || || |||||||| Sbjct 5431 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 5460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396273860135580