Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq319 181 2e-40 seq97 161 2e-34 seq585 150 3e-31 >seq319 Length=516904 Score = 181 bits (200), Expect = 2e-40 Identities = 305/439 (69%), Gaps = 2/439 (0%) Strand=Plus/Minus Query 25596 CGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATT 25655 ||||||||| ||||| || || ||||| || || || ||||| || ||| ||| | || Sbjct 272265 CGTGTTGGCCTTCTTCGCGGCGTCTGACGGCATTGTCAACGAAAACCTGGTCGAACGCTT 272206 Query 25656 CACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 | ||| |||||| || | |||||||||| |||||||| ||||| |||||||||| Sbjct 272205 CTCCAAGGAAGTCCAAGTCACCGAGGCCAAGTTCTTCTACGGCTTCCAAGTGGCCATCGA 272146 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775 ||| | ||| | |||| ||| ||| | |||||| || || |||| || Sbjct 272145 AAACATTCACAGCCAAATGTACTCCATGCTGATCCAGACGTATATCACCGACGAGAAGGA 272086 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835 | | | | ||| || |||||| | | | || |||||||| |||||| || Sbjct 272085 GCGCAACCTGCTATTCAACGCCATCTACGAGTTCCCGTTCATCAAGAAGAAGGCCGATTG 272026 Query 25836 GGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 ||| | ||||||| || |||| || | || ||||| ||| | | || || || Sbjct 272025 GGCGTTCGCATGGATCAGCAACCAGGAGGCGTCCTTCGGCGAACGGGTCATCGCTTTCGC 271966 Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAA 25955 || || ||||||||||| |||||||| || || || |||||||||||||||||| | | Sbjct 271965 CGCCGTCGAGGGCATCTTCTTCAGCGGGTCCTTCGCAGCCATCTTCTGGCTCAAGGA-AC 271907 Query 25956 GGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 | || | ||||||||| ||| | ||||| ||||||||| | | || ||||| || | Sbjct 271906 GCGGTCTCATGCCCGGTCTGACCCACTCCAATGAGCTCATCTCCCGTGATGAGGGCCTTC 271847 Query 26015 ACAGAGATTTTGCCTGCCT 26033 | | || ||||| || || Sbjct 271846 ATCGCGACTTTGCTTGTCT 271828 >seq97 Length=72787 Score = 161 bits (178), Expect = 2e-34 Identities = 698/1085 (64%), Gaps = 38/1085 (4%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCT-CTTG-GCCTCGGGAG 221477 |||||| | | | ||| ||||| |||||| |||||| | | || |||| ||| Sbjct 70205 AGGGCACCATAATGGATAGTCTCGAAGATCTGCTTGTTCAACAGACGTGCGCCTTCGGA- 70147 Query 221478 AAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 |||||| || | |||| | || ||| | || || || ||||| || |||||||||| Sbjct 70146 -AGTGAATGGAAGTCGCATGAGTTGGAAGGCATCAGCGAGGCCCTGGACGCCGATACCGA 70088 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597 |||| | || | | |||| || | || || || ||||| ||| |||||| ||||| Sbjct 70087 TGGGACGATGGCGCTTGTTCGACTTTTCAGCCTCCGGGACGGGGTAATAGTTGATGTCGA 70028 Query 221598 TCAGATTGTTGAGGTTCAGAGTGAT-GACTT--TAACCACCTCGGTCAGCTTCTGGTGAT 221654 | | ||||| | |||| |||| | ||| | || ||| ||| ||| | | || Sbjct 70027 TGATCTTGTTCAAGTTCTTGGTGACAGTCTTCGTGACAGCCT---TCAACTTGTTGAAAT 69971 Query 221655 TGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGG 221714 ||| | | | |||| || || ||||| || ||| | | |||| Sbjct 69970 CGAATTCACGGTTGGGGCCGACGA--AGCGGTTCAAC----GCGAT-----CGACGC--- 69925 Query 221715 CCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGT 221774 ||| || || ||||| ||||| || | | | || | | ||| || || || |||| Sbjct 69924 -CAGATTGCAGACGGCGACCTCATCAGGGGCGCTGTATTCGACGATTTCGGTGCACAGGT 69866 Query 221775 TGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGT 221834 ||||||| ||||| || || |||| | || || ||| || ||| ||||| |||| Sbjct 69865 TGCTGCATTTGATCGTTCCGAGGTTCTGCTGGTTGCTCTTACGGTTGCAGGCGTCTTTGT 69806 Query 221835 AGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTC 221894 | ||||| |||| |||||| || | ||||| | || | | |||||| || | Sbjct 69805 AAAGCATGTAGGGGGTGCCAGTTTCGACTTGAGCGCTGATGATGTGCTTCCAGAGATCGC 69746 Query 221895 TGGCGCTCACCGTCCTCTTGACTGCACC-CTCGGTCTTTTCATACCCGGTATAGAGCATG 221953 || | | | | || | | | | ||| | || | | | || |||||| Sbjct 69745 GAGCCTTGATC-TGCTTTCGGAAACGCTTCTCCGACTCGTATTTC---GTGTAGAGCTCC 69690 Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTC 222013 || ||||| || || | || || || || || ||| | ||| ||||||||| | Sbjct 69689 TCGAACTTCTCGCCCCAGCAGTCCTCAAGACCGGGGCACTCGTGGGGGCACATCAGAGAC 69630 Query 222014 CAG-TGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAA 222072 ||| ||| || | || || | || |||||| || || |||||||| || || | || Sbjct 69629 CAGGTGCC-GTCGGTTTCCACGCGCTTCATGAAAAGATCGGGGATCCAGAGAGCATAGAA 69571 Query 222073 GAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132 |||||| | || |||| ||||| | || || ||| ||| ||||| | |||||| Sbjct 69570 GAGATCACGGGCACGCTCTTCCTCAGCACCACGATTCTTCTTCATATCCATGACCTCAAA 69511 Query 222133 AATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACC 222192 ||||| ||||||||||| || || |||| ||| | |||||| || |||||||| || || Sbjct 69510 GATGTCTGCGTGCCACGGTTCGAGGTAGATGGCGAAAGCGCCAGGACGCTTGTTTCCGCC 69451 Query 222193 CTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 |||||| | | | ||| | |||||| | || || |||| || || || |||| Sbjct 69450 CTGATCGA-CGTAGCGAGCAGTGTTGTTGAATACACGGAGCATCGGGACAAGGCCATTGG 69392 Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGC 222311 | ||| ||| || ||||| | || ||| | | ||| || | | Sbjct 69391 AGACTCCGCCGGTACCAGCAATGTGGGATCCAGTGGCACGGATGTTGTGAACATTGAGCC 69332 Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371 | || || ||||| || |||||| | ||||| ||| | ||||| | ||||| | Sbjct 69331 CAATGCCGCCGGCTGACTTTGAGATCTTTGCGCATTGCTTCAATGTGTCGAAAATGCCAT 69272 Query 222372 CCATAGAGTCCTCCTTGACGT--TCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGA 222429 | || ||| ||| ||| | | |||| || || ||||||||||||| | || Sbjct 69271 CGATGCTGTCATCC--GACATAGTTAGCAAGAAGCAGGACGACATCTGAGGCCGAGGGGT 69214 Query 222430 ACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTA 222489 || || || ||||| ||||| |||| || || || ||| | ||||| |||| ||| Sbjct 69213 ACCCGCATTGAACAGAGTGGGCGTGGCATGGGTGAACCAGCGCTCGGACATGAGATTGTA 69154 Query 222490 CGTCT 222494 |||| Sbjct 69153 GGTCT 69149 >seq585 Length=222271 Score = 150 bits (166), Expect = 3e-31 Identities = 734/1156 (63%), Gaps = 45/1156 (4%) Strand=Plus/Plus Query 221351 TTAGACACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAA 221410 || |||||||| ||| || || | |||||||| ||| | | ||||| | | Sbjct 91674 TTCGACACCGGGGACCCTTCATAGGTCTCGTAGGCACCATGAATACCGGCCAGTTCCGCC 91733 Query 221411 GACTGCGTCA-GGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGC 221469 ||| || ||| ||||| ||| ||||||||||||||||||| |||||| || | | | || Sbjct 91734 GAC-GCTTCAAGGGCACCGTAGTAGATGGTCTCAAAGATCTGCTTGTTCAGACGCCTCGC 91792 Query 221470 CTCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCC 221529 | |||| ||| |||| |||| | || ||| | || || || ||||| || || Sbjct 91793 GCCTTCGGAAGCGAACGGCAGTCGCATGAGTTGGAAGGCATCAGCGAGGCCCTGGACGCC 91852 Query 221530 GATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTT 221589 |||||||||||| | || | | |||| || | || || || || || ||| |||| Sbjct 91853 GATACCGATGGGACGATGGCGCTTGTTCGACTTTTCAGCCTCCGGAACAGGGTAATAGTT 91912 Query 221590 GACGTCGATCAGATTGTTGAGGTTCAGAGTGA-TGACTT--TAACCACCTCGGTCAGCTT 221646 || |||||| | ||||| | |||| |||| | ||| | || ||| ||| ||| Sbjct 91913 GATGTCGATGATCTTGTTCAAGTTCTTGGTGACGGTCTTCGTGACAGCCT---TCAACTT 91969 Query 221647 CTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGC 221706 | | || ||| | | | |||| | | || ||||| || ||| | | Sbjct 91970 GTTGAAATCGAATTCACGGTTGGGGCCGAC--GAAGCGGTTC----AACGCGAT-----C 92018 Query 221707 AACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGT 221766 || ||||| || || ||||| ||||| || | | || | | |||||| || Sbjct 92019 GAC----GCCAGATTGCAGACGGCGACCTCATCAGGCGCGCTGTATTCGACGATCTCGGT 92074 Query 221767 ACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGC 221826 || |||||||| || ||||| || || |||| | || || ||| || ||| || Sbjct 92075 GCACAGGTTGCTACATTTGATCGTTCCGAGGTTCTGTTGGTTGCTCTTACGGTTGCAGGC 92134 Query 221827 GTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCA 221886 || ||||||| ||| |||| ||| || || | |||| | | ||| | | ||| Sbjct 92135 ATCTTTGTAGACCATGTAGGGCGTGCCGGTTTCAACTTGAGAGCCGACAATGTGCTTCCA 92194 Query 221887 GAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCC------ 221940 || || | || || | |||||| || | | |||||| || | Sbjct 92195 AAGGTCACGGG----CAAGG---ACTTGAC--GACGGTAGCGCTTTTCGGACTCGTATTT 92245 Query 221941 GGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGG 222000 ||| |||||| ||||||| || || | || || || || |||||| ||| Sbjct 92246 GGTGTAGAGCTGCTCAAACTCCTCGCCCCAGCAATCCTCGAGACCAGGACACTCATGGGG 92305 Query 222001 ACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060 |||||||| |||| || | || ||| | || ||||||||| || |||||||| Sbjct 92306 GCACATCAGGGACCAGGTTCCGTCGGTTTCGACGCGCTTCATGAAGAGATCGGGGATCCA 92365 Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATC 222120 || || | ||||| || | || || | || || | || |||| ||| | ||||| Sbjct 92366 GAGGGCGTAGAAGAGGTCACGGGCACGTTCTTCATCGGCACCAGTGTTCTTCTTGAGATC 92425 Query 222121 CAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCG 222180 | | || |||| ||| || ||||| ||||| ||||||||||| | || ||||| || Sbjct 92426 GAGGACTTCGAAAACGTCGGCATGCCAGGGCTCGAGATAGACGGCAAAGGCACCGGGACG 92485 Query 222181 CTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTAC 222240 | || || || || | | | || |||||||| ||| || |||| || Sbjct 92486 C---TTACCGCCTTGGTTGATGTAACGAGCCGTGTTGTTGAAGACGCGGAGCATCGGGAC 92542 Query 222241 CAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACT 222300 || |||| || || ||||| | | ||| |||| | | ||| Sbjct 92543 AAGGCCGTGCGAGATGCCACCAGTGCCAGCGACACGGGTTCCGGCGGCACGGATGTTGTG 92602 Query 222301 GGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 | | |||||||| ||||| ||| || ||| || || ||| || ||||| Sbjct 92603 GACGTTGATGCCGATGCCACCAGCGGACTTGCTGATGCGAGCACACTGCTTCAGGGTGTC 92662 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGAC--GTTCAGCAGAAAACAAGACGACATCTGA 222418 | |||||| || | |||||||| |||| | ||| ||| || || |||||||||||| Sbjct 92663 GAAGATGCCTTCAACGGAGTCCTC--TGACATGGTCAACAGGAAGCAGGACGACATCTGA 92720 Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 | | || || || || ||||| ||||| |||| || || || ||| | ||| Sbjct 92721 GGCCGAGGGGTACCCGCATTGAACAGTGTGGGCGTGGCATGAGTGAACCAGCGCTCGGAC 92780 Query 222479 ATCAGATCGTACGTCT 222494 || |||| ||| |||| Sbjct 92781 ATGAGATTGTAGGTCT 92796 Score = 123 bits (136), Expect = 5e-23 Identities = 143/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 25845 GTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGA 25904 |||||||| || |||| || | || ||||| ||| | | ||||| || || || || Sbjct 95372 GTGGATCAGCAACCAGGAAGCGTCCTTCGGCGAACGGGTCATCGCCTTCGCCGCCGTCGA 95313 Query 25905 GGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CA 25963 ||||||||| |||||||| || |||||||||||||||||||| ||| | | | || | || Sbjct 95312 GGGCATCTTCTTCAGCGGGTCCTTTGCGGCCATCTTCTGGCTTAAGGA-ACGCGGTCTCA 95254 Query 25964 TGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATT 26023 ||||||| ||| | ||||| |||||||| | | || ||||| || || | |||| Sbjct 95253 TGCCCGGTCTGACCCACTCCAATGAGCTCATTTCCCGTGATGAGGGCCTTCATCGCGATT 95194 Query 26024 TTGCCTGCCT 26033 |||| ||||| Sbjct 95193 TTGCTTGCCT 95184 Score = 122 bits (134), Expect = 2e-22 Identities = 137/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 25815 CATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGG 25874 |||||||| |||||| ||||| | |||||||| || |||| || | || || Sbjct 123092 CATCAAGAAGAAGGCCGATTGGGCGTTCGCGTGGATCAGCAACCAGGAAGCGTCCTTCGG 123151 Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGC 25934 ||| ||| | | ||||| ||||| || ||||||||||| |||||||| || || ||||| Sbjct 123152 CGAACGGGTCATCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGGTCCTTCGCGGC 123211 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 |||||||||||||||| | | | || | ||||||||| ||| | ||||| ||||||| Sbjct 123212 CATCTTCTGGCTCAAGGA-ACGCGGTCTCATGCCCGGTCTGACCCACTCCAATGAGCTCA 123270 Query 25994 T 25994 | Sbjct 123271 T 123271 Score = 91.5 bits (100), Expect = 3e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 25596 CGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATT 25655 ||||||||| ||||| || || ||||| || || || ||||| || ||| ||| | || Sbjct 122312 CGTGTTGGCCTTCTTCGCGGCTTCTGACGGCATTGTCAACGAAAACCTGGTCGAACGCTT 122371 Query 25656 CACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 | ||| || || || | ||||||||||||||||| || |||||| | || ||||| Sbjct 122372 CTCCAAAGAGGTCCAAGTCACCGAGGCCAAGTGTTTCTATGGATTCCAGGTTGCTATCGA 122431 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACG 25768 ||| | ||| || ||||| ||| ||| | |||||| || || |||| Sbjct 122432 GAATATCCACAGCGAAATGTATTCCATGCTGATCCAGACGTATATCACCGACG 122484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928833886073600