Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq394 122 6e-22 seq850 109 4e-18 seq806 105 4e-17 >seq394 Length=505719 Score = 122 bits (134), Expect = 6e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAGT 480610 || ||||| || || |||||||| ||| ||| || | || || || ||| || || Sbjct 8526 CGCAGACGAAGGACGAGATGAAGGGTAGATTCCTTTTGGATGTTGTAGTC-GCTGAGGGT 8584 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||||||| ||||| || || || ||||||||||| || || || ||||| || Sbjct 8585 GCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGAATGCC 8644 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||||||| ||||| ||||| |||||| || || || | ||| || Sbjct 8645 TTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCGCTGCCTTCGACTTCGAG 8704 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| || || |||||||| ||||| ||||| ||||| Sbjct 8705 GGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 8743 >seq850 Length=631688 Score = 109 bits (120), Expect = 4e-18 Identities = 593/934 (63%), Gaps = 32/934 (3%) Strand=Plus/Plus Query 475365 CAACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATG 475422 |||| ||||| || | ||||| ||||| || ||||||||| | ||||| || | ||| Sbjct 27201 CAACCGCTGGTGACACTCATCTCGGTGGCGAGGATTTTGATGACAGACTCGTCCAACAT- 27259 Query 475423 GTGTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCT----TTCAACATCTGCTAAAG 475478 | ||| | || |||||| | ||| || ||| | | ||||| | | | Sbjct 27260 -TTTGTCGCCGAATTCAAGCGTAAACATGGCCGTGACATCACATCCAACACCCGT----G 27314 Query 475479 CATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGC--TAC 475536 | | | || ||| |||| ||||| || || |||||||| || || | || | | Sbjct 27315 CCCTCCGGCGACTTCGAACCGCTTGCGAGCGGGCTAAGCGGACT--TTGAGCAGCAGTGC 27372 Query 475537 TCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTAC 475596 | | | ||| ||||||||||| |||| ||| || || || | | || | | || | Sbjct 27373 CGAGGCAATTGTCGAAGTTGATTCCCTTTCTGATGGCATCGACTTTCATTCGCGGATCAG 27432 Query 475597 AAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGA 475656 | || |||||||| | || ||| ||||| | || || |||| || || || Sbjct 27433 CCGAGCCCGTTTTGAAGAATTGTGCAATGACCTCTTCCGGAAGACGCTTGACCCGGTCGA 27492 Query 475657 ACAAGTTCTCAGAGATTCTAAACTTGACAAAT-CACAAGTCCATGAAATTGTTCTTGTAG 475715 ||| | ||| | || | ||||| |||||| | | | || ||||| | || || || | Sbjct 27493 ACAGGCCCTCCGCGACGCCAAACTCGACAAACGCTCCA-TCGATGAAGTCGTCCTCGTCG 27551 Query 475716 GAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAA 475775 | || || || | |||| || || || || | || ||| | | ||| Sbjct 27552 GTGGCTCTACCCGTGTTCCGAAGATTCAAGCCCTGTTGAAGGAATTTTTCCACGACAAAG 27611 Query 475776 AGTTAAATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGC 475833 | | || |||| | || || |||||||| ||||| ||||| ||||||||||| || Sbjct 27612 AACTCAAC--AAGTCCATCAACCCGGATGAAGCCGTTGCTTATGGCGCTGCTGTCCAGGC 27669 Query 475834 AGCTATTTTATCAGGTCAATCA--GACGAGAAACTAAATAATATTGTACTTGTTGACGTA 475891 || || | || || ||||| ||||| | || | || | || || || || Sbjct 27670 TGCCATCCTCTCCGG--AATCAAAGACGAAGGCGTCAAAGACGTTCTTCTCGTCGATGTC 27727 Query 475892 ACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGA 475951 |||| || | || | ||||| | || || | ||||| || || ||||| | Sbjct 27728 GCTCCCCTGAGCCTTGGAATCGAAACCGCCGGCGGCGTCATGACAAAACTCATTGAACGC 27787 Query 475952 AATACTCCTATCCCATGCAAAAA---ATCAAAAGTATTTTCCACTTATTCTGATAATCAA 476008 || || | | ||||| || || | | | | || || || ||| | || ||||| Sbjct 27788 AACACCCGTGTCCCA--CATAAGGCTACCCAGACC-TTCTCGACGTATGCCGACAATCAG 27844 Query 476009 ACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAA 476068 | | || ||||||||| |||| ||||| ||| | | || || || || | Sbjct 27845 CCTGCGGTCACCATCCAAGTCTTCGAAGGCGAACGTGCCATGACGAAGGACAACCATTGC 27904 Query 476069 CTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAA 476128 ||||| ||| |||| || || || || ||||| | ||| | |||||||||||| Sbjct 27905 CTTGGGCAATTTGATCTCACTGGAATCCCGCCAGCTCCGCGTGGAATCCCTCAAATTGAA 27964 Query 476129 GTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGT 476188 || | ||| || |||||||| ||||| || || ||||| |||| || || || | Sbjct 27965 GTCATTTTCGACATTGATGCCAATGGAATCCTGCATGTTCACGCTTCCGACAAGTCAACC 28024 Query 476189 AACAAGAGTAAAAATATAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATT 476248 |||||| || ||| || | || | |||||| | | | | || |||| Sbjct 28025 GGCAAGAGCAACCGTATCCAAATCAAGAATGAGCGTGGTCGTCTATCCGCCGATGAAATC 28084 Query 476249 CAACGTATGGTTGATGAAGCCAAAGAGTTTGAAG 476282 ||||||||||| ||||||||||| ||||||| Sbjct 28085 CAACGTATGGTCGATGAAGCCAAGCGTTTTGAAG 28118 >seq806 Length=689343 Score = 105 bits (116), Expect = 4e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| || ||||| || || ||| || | || || || | ||||| Sbjct 392642 CGAAGACGGAGAACGAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTA 392701 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||||||||| |||||||| || || || ||||| || || || || ||||| ||| Sbjct 392702 CGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCT 392761 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| || ||||| |||||| |||||||| || || | | || ||| Sbjct 392762 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATAGTGTCGCTGCCTTCAACCTCGAGG 392821 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| || || || || Sbjct 392822 GTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTG 392859 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||||||||| ||||| || || || || ||||| || ||||| || ||||| |||||||| Sbjct 392251 ATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATACCTTCCTT 392310 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||||||||| ||||| ||||| || || | | ||||||||| || Sbjct 392311 GTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAACCCTCAACTTCAAGGGTGAT 392370 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || ||||| ||||| || || Sbjct 392371 GGTCTTTCCGGTAAGGGTCTTGACGAAGATCTG 392403 Score = 96.9 bits (106), Expect = 2e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| ||||| || || ||||| || ||||| ||||| || |||||||||||||| ||||| Sbjct 393005 CTTACCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTT 393064 Query 480689 TTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748 |||||| |||||| || || | | | | |||||||| || || || ||||| Sbjct 393065 GGCCTTGACATTTTCAATGGTGTCTGAGCCTTCAACCTCAAGGGTGATGGTCTTGCCGGT 393124 Query 480749 GAGAGTCTTAACGAAAATTTG 480769 |||||||| ||||| || || Sbjct 393125 AAGAGTCTTGACGAAGATCTG 393145 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || ||||| ||||| ||| || | || || || | || || Sbjct 391957 ACGGAGACGGAGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGT 392016 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||||||| |||||||| || || || | || ||||| || || ||||| || Sbjct 392017 ACGGCCATCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCC 392076 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||| |||||||||||| ||||| || || || || | | | ||| || Sbjct 392077 TTCCTTATCTTGAATCTTTGCCTTGACGTTCTCGATGGTGTCTGATCCTTCAACTTCGAG 392136 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| ||||| || || || | ||| || ||||| || || Sbjct 392137 GGTGATAGTCTTGCCAGTCAAAGTTTTCACGAAGATCTG 392175 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| || || || ||||||||||| || || ||||| || |||||||| Sbjct 392479 ATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGAGGGATGCCTTCCTT 392538 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||||||||||| ||||| ||| || || || || | | ||| ||||| || Sbjct 392539 ATCTTGAATCTTAGCCTTGACGTTTTCGATGGTGTCGCTGCCTTCAACTTCGAGGGTGAT 392598 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || ||||| || ||||| || || || || Sbjct 392599 AGTCTTTCCGGTAAGGGTCTTGACAAAGATCTG 392631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268138878839120