Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq930 118 3e-21 seq97 118 3e-21 seq894 89.7 2e-12 seq585 87.8 5e-12 >seq930 Length=553560 Score = 118 bits (130), Expect = 3e-21 Identities = 182/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| | ||| |||||||| ||||| ||| || || || ||||||||| Sbjct 233008 TCCATAGCCTTGATGAGACGTCGCTGAATGTAACCGGTTTCAGCAGTCTTGACAGCTGTA 232949 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| |||||||||||||||| |||||||| | || || || || Sbjct 232948 TCGATGAGACCTTCACGACCACCCATAGCGTGGAAGAAGAATTCGGTGGGGGTGAGACCG 232889 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754 | | |||| |||| ||||||||||||| || || || ||| |||| | ||| Sbjct 232888 GCGAGGTAGGAATTCTCGACGAAACCACGCGATTCCGGACCATAATCGTCCTTGATGAAG 232829 Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814 || |||||||| | | | ||| | || |||||||| || || ||||| || || Sbjct 232828 TGAGGCAGGGTGCGATGACGGAAACCGAACGGAATACGCTTGCCTTCGACGTTTTGTTGA 232769 Query 302815 CCCAGGCACGAAATCATCTG 302834 || | || | ||| | ||| Sbjct 232768 CCGACACAGGCAATGACCTG 232749 >seq97 Length=72787 Score = 118 bits (130), Expect = 3e-21 Identities = 488/759 (64%), Gaps = 23/759 (3%) Strand=Plus/Minus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAG 155648 || ||||||||||| || || || ||| | | |||||||||| || || || | Sbjct 69932 ATCGACGCCAGATTGCAGACGGCGACCTCATCAGGGGCGCTGTATTCGACGATTTCGGTG 69873 Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708 |||||||| | ||||| || || | |||| |||||| |||| ||| || || Sbjct 69872 CACAGGTTGCTGCATTTGATCGTTCCGAGGTTCTGCTGGTTGCTCTTACGGTTGCAGGCG 69813 Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAG 155768 || ||||| || ||||| ||||| || || || | || ||| | || | |||| Sbjct 69812 TCTTTGTAAAGCATGTAGGGGGTGCCAGTTTCGACTTGAGCGCTGATGATGTGCTTCCAG 69753 Query 155769 AGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCT-TCCGACTCATATTTCATATACAG 155827 || || || || || || ||||| | | | || | |||||||| |||||| | || || Sbjct 69752 AGATCGCGAGCCTTGATCTGCTT-TCGGAAACGCTTCTCCGACTCGTATTTCGTGTAGAG 69694 Query 155828 CGTTCGGTAATCCTCACCGTAACAATCACTC-AGTCCAGGGCACTTATCGGGGCAAAACA 155886 | | | | ||| || | || || ||| || || ||||||| | |||||| | || Sbjct 69693 CTCCTCGAACTTCTCGCCCCAGCAGTC-CTCAAGACCGGGGCACTCGTGGGGGCACATCA 69635 Query 155887 GCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATACATCACTCGCCCAAATAGC 155944 | ||||| | | | | || || |||| ||| || | ||| ||| | ||| Sbjct 69634 GAGACCAGGTGCCGT--CGGTTTCCACGCGCTTCATGAAAAGATCGGGGATCCAGAGAGC 69577 Query 155945 ATAGAAAAGGTCCCTTGC---CTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAA 156001 |||||| || || | || || | |||||| | || |||||||| | || | Sbjct 69576 ATAGAAGAGATCACGGGCACGCTCT---TCCTCAGCACCACGATTCTTCTTCATATCCAT 69520 Query 156002 GAATTCCTCA---ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCT 156058 || ||||| || || | || || || || || || || ||| ||| | Sbjct 69519 GA---CCTCAAAGATGTCTGCGTGCCACGGTTCGAGGTAGATGGCGAAAGCGCCAGGACG 69463 Query 156059 CTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAAT 156115 |||| || |||||||| || || |||||||| || ||||| |||| ||||| || | Sbjct 69462 CTTGTTTCCGCCCTGATCGACGTAGCGAGCAGTGTTGTTGAATACACGGAGCATCGGGAC 69403 Query 156116 AATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATG 156175 || |||||||| || ||| || ||| || || |||| | || | || || Sbjct 69402 AAGGCCATTGGAGACTCCGCCGGTACCAGCAATGTGGGATCCAGTGGCACGGATGTTGTG 69343 Query 156176 AATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATT 156235 || || || ||||| || || | | || || || | ||||||| ||| | || | Sbjct 69342 AACATTGAGCCCAATGCCGCCGGCTGACTTTGAGATCTTTGCGCATTGCTTCAATGTGTC 69283 Query 156236 GAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGG 156295 |||||| || || || ||||| ||| | ||| | |||| || | ||||| Sbjct 69282 GAAAATGCCATCGATGCTGTCATCCGACATAGTTAGCAAGAAGCAGGACGACATCTGAGG 69223 Query 156296 TCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATG 156334 || || || || || ||||| || || || || ||||| Sbjct 69222 CCGAGGGGTACCCGCATTGAACAGAGTGGGCGTGGCATG 69184 >seq894 Length=154544 Score = 89.7 bits (98), Expect = 2e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 251502 ACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGG 251561 ||||||||||||||||||||||| ||| ||||||||||||||||| | || || | ||| Sbjct 145064 ACAATCACGCTCCATTTCACCGAGACGCAGACCACCATCGCGAGCACGGCCTTCTGTAGG 145005 Query 251562 CTGACGAGTGAG 251573 ||||||||| || Sbjct 145004 CTGACGAGTTAG 144993 >seq585 Length=222271 Score = 87.8 bits (96), Expect = 5e-12 Identities = 209/308 (68%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACA 155647 || ||||||||||| || || || ||| | | || |||||||||| || ||||| Sbjct 92016 ATCGACGCCAGATTGCAGACGGCGACCTCATCAGGCG-CGCTGTATTCGACGATCTCGGT 92074 Query 155648 GCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGC 155707 ||||||||| || ||||| || || | |||| ||||| |||| ||| || || Sbjct 92075 GCACAGGTTGCTACATTTGATCGTTCCGAGGTTCTGTTGGTTGCTCTTACGGTTGCAGGC 92134 Query 155708 ATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCA 155767 ||| ||||| | ||||| || || || || || | || | | | | ||| | ||| Sbjct 92135 ATCTTTGTAGACCATGTAGGGCGTGCCGGTTTCAACTTGAGAGCCGACAATGTGCTTCCA 92194 Query 155768 GAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAG 155827 |||||||||||| | ||| ||| | ||| ||||| ||||| | || || Sbjct 92195 AAGGTCACGGGCAAGGACTTGACGACGGTAGCGCTTTTCGGACTCGTATTTGGTGTAGAG 92254 Query 155828 C-GTTCGGTAATCCTCACCGTAACAATCACTC-AGTCCAGGGCACTTATCGGGGCAAAAC 155885 | | || | ||||| || | ||||| ||| || ||||| |||| || |||||| | | Sbjct 92255 CTGCTC-AAACTCCTCGCCCCAGCAATC-CTCGAGACCAGGACACTCATGGGGGCACATC 92312 Query 155886 AGCGACCA 155893 || ||||| Sbjct 92313 AGGGACCA 92320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471799873796780