Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq895 170 2e-36 seq930 134 2e-25 seq697 129 7e-24 seq585 129 7e-24 seq97 113 6e-19 seq319 102 1e-15 seq911 95.1 1e-13 >seq895 Length=1000036 Score = 170 bits (188), Expect = 2e-36 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| ||| ||| ||||| ||||| |||||||| ||||| | || Sbjct 4601 GCTTGGCGAGCTCACCGGGCAGGATGAGGCGGACGGCCGTCTGGATTTCGCGGCTCGAGA 4660 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||||||| ||||||| || ||||||| |||| | Sbjct 4661 TGGTGGAGCGCTTGTTGTACTGGGCCAGACGGGAGGCCTCGTTGGCGATGCGCTCGAAGA 4720 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| ||||||||||||| |||||| | |||| ||||| || |||||||| Sbjct 4721 CGTCGTTGACGAACGAGTTCATGATCGACATGGCCTTGGAGGAGACACCGGTGTCGGGGT 4780 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACG 1254561 |||||||||| || || ||||||| || ||||||| Sbjct 4781 GCACCTGCTTCAGGACGCGGTAGATGTACACGGAGTACG 4819 Score = 86.0 bits (94), Expect = 8e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| ||| ||| || || |||||||||||||| ||||| | || Sbjct 253 GCTTGGCGAGCTCACCGGGCAGGATGAGTCGGACGGCGGTCTGGATTTCGCGGCTCGAGA 312 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCG 1254454 |||| ||||||||| | || ||||||||| ||||||| || ||||||| Sbjct 313 TCGTAGAGCGCTTGTTGTACTGGGCCAGACGGGAGGCCTCGTTGGCGATGCG 364 >seq930 Length=553560 Score = 134 bits (148), Expect = 2e-25 Identities = 162/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| ||| ||| ||| ||||| |||||||||||||| ||||| | || Sbjct 469311 GCTTGGCGAGTTCACCGGGCAGGATGAGGCGGACGGCGGTCTGGATTTCGCGGCTCGAGA 469370 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || |||||||| ||| || || ||||||| |||| | Sbjct 469371 TGGTCGAGCGCTTGTTGTACTGGGCCAGACGCGAGGCTTCATTGGCGATGCGCTCGAAGA 469430 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||| ||||| | |||| ||||| || |||||||| Sbjct 469431 CGTCGTTGACGAAGCTGTTCATGATGGACATGGCCTTGGAGGAGACACCGGTGTCGGGGT 469490 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTA 1254559 | |||||||| || || ||||||| | ||| ||||| Sbjct 469491 GGACCTGCTTCAGGACACGGTAGATGTA-GACGGAGTA 469527 >seq697 Length=123847 Score = 129 bits (142), Expect = 7e-24 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||| || || || ||||||||||| ||||| | || Sbjct 62944 GCTTGGCGAGCTCACCGGGGAGGATGAGACGGACAGCGGTCTGGATTTCGCGGCTCGAGA 63003 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| || ||| || ||||||| |||| | Sbjct 63004 TGGTGGAGCGCTTGTTGTACTGGGCCAGGCGGGAAGCTTCGTTGGCGATGCGTTCGAAGA 63063 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| ||||| ||||||||||||| ||||| | |||| ||||| || |||||| | Sbjct 63064 CGTCATTGACGAACGAGTTCATGATGGACATGGCCTTGGAGGAGACACCAGTGTCGGGAT 63123 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTA 1254559 | ||||||||||| || ||||||| | ||| ||||| Sbjct 63124 GGACCTGCTTGAGGACGCGGTAGATGTA-GACGGAGTA 63160 >seq585 Length=222271 Score = 129 bits (142), Expect = 7e-24 Identities = 208/299 (70%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||| || ||| || ||||||| ||| |||||||||||||| || || ||||||| || Sbjct 92496 TGGTTGATGTAACGAGCCGTGTTGTTGAAGACGCGGAGCATCGGGACAAGGCCGTGCGAG 92555 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||| ||||| || || || |||||||| || | ||||| || | |||| Sbjct 92556 ATGCCACCAGTGCCAGCGACACGGGTTCCGGCGGCACGGATGTTGTGGACGTTGATGCCG 92615 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| || || |||||| |||| | || ||||| || || |||||| ||||||| || Sbjct 92616 ATGCCACCAGCGGACTTGCTGATGCGAGCACACTGCTTCAGGGTGTCGAAGATGCCTTCA 92675 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 | ||||| | |||| || || ||||| ||||| | || || | | || || Sbjct 92676 ACGGAGTCCTCTGACATGGTCAACAGGAAGCAGGACGACATCTGAGGCCGAGGGGTACCC 92735 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 || ||||| || |||||||| || |||||| | || |||||| | |||||| Sbjct 92736 GCATTGAACAGTGTGGGCGTGGCATGAGTGAACCAGCGCTCGGACATGAGATTGTAGGT 92794 Score = 102 bits (112), Expect = 1e-15 Identities = 118/158 (75%), Gaps = 7/158 (4%) Strand=Plus/Minus Query 869216 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAA 869275 || ||||||||||| ||||| | ||||||||| |||||||| ||| || ||| Sbjct 123250 AGACCGGGCATGAGACCGCGTTCCTTGAGCCAGAAGATGGCCGCGAAGGACCCGCTGAAG 123191 Query 869276 AAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGC--CCT 869333 ||||||||||||||||| || ||| |||||| ||| ||| | ||| || || ||| Sbjct 123190 AAGATGCCCTCGACGGCAGCGAAGGCGATGACCCGTTCGCCGAAG-----GACGCTTCCT 123136 Query 869334 CCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371 ||| |||||||| | |||||| |||||||| ||| Sbjct 123135 GGTTGCTGATCCACGCGAACGCCCAATCGGCCTTCTTC 123098 Score = 91.5 bits (100), Expect = 2e-12 Identities = 86/107 (80%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 869216 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGA-GAA 869274 || ||||||||||| ||||| | ||| ||||| |||||||| | ||| |||| ||| Sbjct 95244 AGACCGGGCATGAGACCGCGTTCCTTAAGCCAGAAGATGGC-CGCAAAGGACCCGCTGAA 95302 Query 869275 AAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGG 869321 |||||||||||||||||||| ||| |||||| ||| ||| | |||| Sbjct 95303 GAAGATGCCCTCGACGGCGGCGAAGGCGATGACCCGTTCGCCGAAGG 95349 >seq97 Length=72787 Score = 113 bits (124), Expect = 6e-19 Identities = 209/304 (69%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||| ||||||||||| || |||| ||| || || |||||||| || || ||||| || Sbjct 69453 GCCCTGATCGACGTAGCGAGCAGTGTTGTTGAATACACGGAGCATCGGGACAAGGCCATT 69394 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| | ||| ||| || || | || || || | ||| || | ||||| | | Sbjct 69393 GGAGACTCCGCCGGTACCAGCAATGTGGGATCCAGTGGCACGGATGTTGTGAACATTGAG 69334 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 || ||||||||||| ||||| ||||| ||||| || || | |||||| | ||||| Sbjct 69333 CCCAATGCCGCCGGCTGACTTTGAGATCTTTGCGCATTGCTTCAATGTGTCGAAAATGCC 69274 Query 1630242 CTCGATCGAGTCGGCCTTCAT-GTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCG 1630300 ||||| ||| || ||| || | || ||||| ||||| | || || | | | Sbjct 69273 ATCGATGCTGTCATCCGACATAGTTAGCAAG-AAGCAGGACGACATCTGAGGCCGAGGGG 69215 Query 1630301 TGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGT 1630360 | || || ||||| || |||||||| || ||||||| | || |||||| | || Sbjct 69214 TACCCGCATTGAACAGAGTGGGCGTGGCATGGGTGAACCAGCGCTCGGACATGAGATTGT 69155 Query 1630361 AGGT 1630364 |||| Sbjct 69154 AGGT 69151 >seq319 Length=516904 Score = 102 bits (112), Expect = 1e-15 Identities = 134/185 (72%), Gaps = 7/185 (4%) Strand=Plus/Plus Query 869216 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAA 869275 || ||||||||||| ||||| | ||||||||| |||||||| ||| || ||| Sbjct 271888 AGACCGGGCATGAGACCGCGTTCCTTGAGCCAGAAGATGGCTGCGAAGGACCCGCTGAAG 271947 Query 869276 AAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGC--CCT 869333 |||||||||||||||||||| || |||||| ||| ||| | ||| || || ||| Sbjct 271948 AAGATGCCCTCGACGGCGGCGAAAGCGATGACCCGTTCGCCGAAG-----GACGCCTCCT 272002 Query 869334 CCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGA 869393 ||| ||||||| | |||||| |||||||| ||| | | |||| | | || || Sbjct 272003 GGTTGCTGATCCATGCGAACGCCCAATCGGCCTTCTTCTTGATGAACGGGAACTCGTAGA 272062 Query 869394 TGGCG 869398 ||||| Sbjct 272063 TGGCG 272067 >seq911 Length=634982 Score = 95.1 bits (104), Expect = 1e-13 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 |||||||| ||||||||||||||| || ||||| | |||||| | || || ||| Sbjct 458445 GCCGCCAATTACCTCGACATCAAGGGCCTCCTCGACGTCACCTGCAAGACCGTAGCTAAC 458504 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||| |||||| | ||||| |||||||| ||||| ||||||||| ||| Sbjct 458505 ATGATCAAAGGCAAGACCCCCGAAGAGATCCGTCGTACCTTCAACATCAAGAACG 458559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107062059197980