Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq408 178 1e-39 seq41 163 2e-35 seq28 141 8e-29 seq708 127 2e-24 >seq408 Length=260203 Score = 178 bits (196), Expect = 1e-39 Identities = 208/281 (74%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 34351 ACAAACTTGCGGATGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCG 34410 || ||||| |||||| |||||||| || || | ||| | ||||| |||| Sbjct 70638 ACGAACTTCTTGATGAAGTTGTCAAGCAGATCTTGAAGCTTGTTAGCATCGTGCTCGCCG 70579 Query 34411 TTGACGATGAATCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCG 34470 || |||||| | ||||| || ||| || | || || || || || || || || || Sbjct 70578 TTAACGATGTAGCGTTCATTCTTGAGGTCAAAGTGGGTCTGGGCTCCGAGTTCACAGCCA 70519 Query 34471 AAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTG 34530 ||| |||| |||||||| | | ||||| ||||| ||||| ||||| |||| ||||||| Sbjct 70518 AAGAACTTGGTCGGGTACGTCGGGGGACGACCAAGAGCCTTCGCGATATCGGTCATGTTG 70459 Query 34531 ACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATT 34590 | ||||| ||||||||||| |||||||| ||||||||||| || || || ||||| Sbjct 70458 GCAATGACGGTCTTGATGCCATTGCCCTTGCCTTCGACCTTAGCCTGGAGACGGGGCATC 70399 Query 34591 TTGTAGCGGTAGAACGCGTCCGCCACATTGCGGTTAACGTT 34631 |||||||||||||| | ||| || |||||||||||||| Sbjct 70398 TTGTAGCGGTAGAAGGGGTCAATAACGTTGCGGTTAACGTT 70358 >seq41 Length=154017 Score = 163 bits (180), Expect = 2e-35 Identities = 224/313 (72%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 34319 CAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCA 34378 |||||||||| || || || | | || | |||||||| |||||| ||||||||| Sbjct 77939 CAGTCTCCGGATTCTCGCAACCGGTGCAAAGAACAAACTTTTTGATGAACACATCAAGCA 77998 Query 34379 GGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAAT 34438 |||| || | ||| | | | || | || ||||| ||| | ||||| || ||| | Sbjct 77999 GGTCTTGAAGCTTCTCTGCACCATGAGCCCCATTGACAATGTAGCGTTCATTCTTGGGGT 78058 Query 34439 CGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGAC 34498 | | | | ||||| | || || || ||||| | || ||||| || | | |||| Sbjct 78059 CAAACCGAGTTTGAGACCCGAGTTCTATGCCGAAAAATTTGGTCGGATACGTCGGAGGAC 78118 Query 34499 GTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCT 34558 | || || ||||| ||||| |||| ||||||||| ||||||||||||||||| || |||| Sbjct 78119 GCCCGAGAGCCTTTGCGATATCGGTCATGTTGACAATGACAGTCTTGATGCCATTACCCT 78178 Query 34559 TTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACAT 34618 | || |||||||| || || || ||||| |||||||||||||| | ||| || | Sbjct 78179 TGCCCTCGACCTTCGCCTGGAGACGAGGCATCTTGTAGCGGTAGAAGGGGTCGATGACGT 78238 Query 34619 TGCGGTTAACGTT 34631 | |||||||| || Sbjct 78239 TACGGTTAACATT 78251 Score = 145 bits (160), Expect = 6e-30 Identities = 220/313 (70%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 34319 CAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCA 34378 |||||||||| || || || | | || | |||||||| |||||| ||||||||| Sbjct 7367 CAGTCTCCGGATTCTCGCAACCGGTGCAAAGAACAAACTTTTTGATGAACACATCAAGCA 7426 Query 34379 GGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAAT 34438 |||| || | ||| | | | || | || ||||| ||| | ||||| || ||| | Sbjct 7427 GGTCTTGAAGCTTCTCTGCACCATGAGCCCCATTGACAATGTAGCGTTCATTCTTGGGGT 7486 Query 34439 CGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGAC 34498 | | | ||||| | || || || || || | || ||||| || | | ||||| Sbjct 7487 CAAAGCGAGTTTGAGACCCGAGTTCTATGCCAAAAAATTTGGTCGGATACGTCGGCGGAC 7546 Query 34499 GTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCT 34558 | ||||| ||||| ||||| |||| ||| ||| | ||||| |||||||| ||||| |||| Sbjct 7547 GCCCAAGGGCCTTCGCGATGTCGGTCATATTGGCAATGACGGTCTTGATTCCGTTACCCT 7606 Query 34559 TTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACAT 34618 | || || | ||| || || || ||||| |||||||||||||||| ||| || | Sbjct 7607 TGCCCTCTATCTTAGCCTGGAGACGAGGCATCTTGTAGCGGTAGAACGGGTCAATGACGT 7666 Query 34619 TGCGGTTAACGTT 34631 | |||||||| || Sbjct 7667 TACGGTTAACATT 7679 >seq28 Length=486 Score = 141 bits (156), Expect = 8e-29 Identities = 218/311 (70%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 |||||||| || || || | | || | |||||||| |||||| ||||||||||| Sbjct 484 GTCTCCGGATTCTCGCAACCGGTGCAAAGAACAAACTTTTTGATGAACACATCAAGCAGG 425 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440 || || | ||| | | | || | || ||||| ||| | ||||| || ||| || Sbjct 424 TCTTGAAGCTTCTCTGCACCATGAGCCCCATTGACAATGTAGCGTTCATTCTTGGGGTCA 365 Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGT 34500 | | ||||| | || || || || || | || ||||| || | | |||||| Sbjct 364 AAGCGAGTTTGAGACCCGAGTTCTATGCCAAAAAATTTGGTCGGATACGTCGGCGGACGC 305 Query 34501 CCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTT 34560 ||||| ||||| ||||| |||| ||| ||| | ||||| |||||||| ||||| ||||| Sbjct 304 CCAAGGGCCTTCGCGATGTCGGTCATATTGGCAATGACGGTCTTGATTCCGTTACCCTTG 245 Query 34561 CCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTG 34620 || || | ||| || || || ||||| |||||||||||||||| ||| || || Sbjct 244 CCCTCTATCTTAGCCTGGAGACGAGGCATCTTGTAGCGGTAGAACGGGTCAATGACGTTA 185 Query 34621 CGGTTAACGTT 34631 |||||||| || Sbjct 184 CGGTTAACATT 174 >seq708 Length=339021 Score = 127 bits (140), Expect = 2e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 34494 CGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTT 34553 |||||| ||||| ||||| ||||| |||| ||| ||| | ||||| ||||||||||| || Sbjct 99908 CGGACGCCCAAGGGCCTTCGCGATGTCGGTCATATTGGCAATGACGGTCTTGATGCCATT 99849 Query 34554 GCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGC 34613 ||||||||| |||||||| || || || ||||| |||||||||||||||| ||| Sbjct 99848 GCCCTTTCCCTCGACCTTCGCCTGGAGACGAGGCATCTTGTAGCGGTAGAACGGGTCAAT 99789 Query 34614 CACATTGCGGTTAACGTT 34631 || || |||||||| || Sbjct 99788 GACGTTACGGTTAACATT 99771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412836870383420