Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq895 212 1e-48 seq697 185 1e-40 seq930 176 7e-38 seq585 129 9e-24 seq97 109 9e-18 seq319 104 4e-16 seq911 100 5e-15 seq680 100 5e-15 >seq895 Length=1000036 Score = 212 bits (234), Expect = 1e-48 Identities = 190/236 (81%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || |||||||||||| |||| || || ||| ||| Sbjct 4562 TGTACTTGGTGACGGCCTTGGTGCCTTCGGAGACGGCGTGCTTGGCGAGCTCACCGGGCA 4621 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| ||||| ||||| |||||||| |||||| | ||| ||| ||||||||| || | Sbjct 4622 GGATGAGGCGGACGGCCGTCTGGATTTCGCGGCTCGAGATGGTGGAGCGCTTGTT-GTAC 4680 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| ||| ||||||| || ||||||| |||| | ||||||||| ||||||||| Sbjct 4681 TGGGCCAGACGGGAGGCCTCGTTGGCGATGCGCTCGAAGACGTCGTTGACGAACGAGTTC 4740 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||||| | ||| ||||| || |||||||||||||||||| || || Sbjct 4741 ATGATCGACATGGCCTTGGAGGAGACACCGGTGTCGGGGTGCACCTGCTTCAGGAC 4796 Score = 132 bits (146), Expect = 8e-25 Identities = 122/152 (80%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || |||||||||||| |||| || || ||| | | Sbjct 5 TGTACTTGGTGACGGCCTTGGTGCCTTCGGAGACGGCGTGCTTGGCGAGCTCACCGGGTA 64 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| ||||| ||||| |||||||| || ||| | ||||||| ||||||||| || | Sbjct 65 GGATGAGGCGGACGGCCGTCTGGATTTCACGGCTCGAGATCGTGGAGCGCTTGTT-GTAC 123 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCG 1485620 | ||||| ||| ||||||| || ||||||| Sbjct 124 TGGGCCAGACGGGAGGCCTCGTTGGCGATGCG 155 Score = 132 bits (146), Expect = 8e-25 Identities = 122/152 (80%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || || ||||||||| |||| || || ||| ||| Sbjct 214 TGTACTTGGTGACGGCCTTGGTGCCTTCAGACACGGCGTGCTTGGCGAGCTCACCGGGCA 273 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || |||||||||||||| |||||| | |||||| ||||||||| || | Sbjct 274 GGATGAGTCGGACGGCGGTCTGGATTTCGCGGCTCGAGATCGTAGAGCGCTTGTT-GTAC 332 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCG 1485620 | ||||| ||| ||||||| || ||||||| Sbjct 333 TGGGCCAGACGGGAGGCCTCGTTGGCGATGCG 364 >seq697 Length=123847 Score = 185 bits (204), Expect = 1e-40 Identities = 184/236 (78%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || |||||||||||| |||| || || ||| | | Sbjct 62905 TGTACTTGGTGACGGCCTTGGTGCCTTCCGAGACGGCGTGCTTGGCGAGCTCACCGGGGA 62964 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || ||||||||||| |||||| | ||| ||| ||||||||| || | Sbjct 62965 GGATGAGACGGACAGCGGTCTGGATTTCGCGGCTCGAGATGGTGGAGCGCTTGTT-GTAC 63023 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||||||| || ||| || ||||||| |||| | ||| ||||| ||||||||| Sbjct 63024 TGGGCCAGGCGGGAAGCTTCGTTGGCGATGCGTTCGAAGACGTCATTGACGAACGAGTTC 63083 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||| ||||| | ||| ||||| || |||||| || ||||||||||| || Sbjct 63084 ATGATGGACATGGCCTTGGAGGAGACACCAGTGTCGGGATGGACCTGCTTGAGGAC 63139 >seq930 Length=553560 Score = 176 bits (194), Expect = 7e-38 Identities = 182/236 (77%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || ||||| |||||| |||| ||||| ||| ||| Sbjct 469272 TGTACTTGGTGACGGCCTTGGTGCCTTCAGAGACAGCGTGCTTGGCGAGTTCACCGGGCA 469331 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| ||||| |||||||||||||| |||||| | ||| || ||||||||| || | Sbjct 469332 GGATGAGGCGGACGGCGGTCTGGATTTCGCGGCTCGAGATGGTCGAGCGCTTGTT-GTAC 469390 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| || ||| || || ||||||| |||| | ||||||||| || |||| Sbjct 469391 TGGGCCAGACGCGAGGCTTCATTGGCGATGCGCTCGAAGACGTCGTTGACGAAGCTGTTC 469450 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||| ||||| | ||| ||||| || ||||||||| |||||||| || || Sbjct 469451 ATGATGGACATGGCCTTGGAGGAGACACCGGTGTCGGGGTGGACCTGCTTCAGGAC 469506 >seq585 Length=222271 Score = 129 bits (142), Expect = 9e-24 Identities = 208/299 (70%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||| || || || ||||||| ||| |||||||||||||| || |||||||||| || Sbjct 92496 TGGTTGATGTAACGAGCCGTGTTGTTGAAGACGCGGAGCATCGGGACAAGGCCGTGCGAG 92555 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 ||| ||||| || || || || | ||| || | ||||| || | |||| Sbjct 92556 ATGCCACCAGTGCCAGCGACACGGGTTCCGGCGGCACGGATGTTGTGGACGTTGATGCCG 92615 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 ||||| || || | |||| |||| | || |||| ||||| || ||| ||||||| || Sbjct 92616 ATGCCACCAGCGGACTTGCTGATGCGAGCACACTGCTTCAGGGTGTCGAAGATGCCTTCA 92675 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 | ||||| | |||| |||||| ||||| ||||| | || || || | || || Sbjct 92676 ACGGAGTCCTCTGACATGGTCAACAGGAAGCAGGACGACATCTGAGGCCGAGGGGTACCC 92735 Query 2073781 GCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 |||||||| || |||||||| || ||| || | | | ||||||| | |||||| Sbjct 92736 GCATTGAACAGTGTGGGCGTGGCATGAGTGAACCAGCGCTCGGACATGAGATTGTAGGT 92794 Score = 89.7 bits (98), Expect = 8e-12 Identities = 115/158 (73%), Gaps = 7/158 (4%) Strand=Plus/Minus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || ||||||||||| ||||| | ||||||||| |||||||| ||| || ||| Sbjct 123250 AGACCGGGCATGAGACCGCGTTCCTTGAGCCAGAAGATGGCCGCGAAGGACCCGCTGAAG 123191 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGC--CCT 794494 ||||||||||||||||| || ||| ||| || ||| ||| | || | | || ||| Sbjct 123190 AAGATGCCCTCGACGGCAGCGAAGGCGATGACCCGTTCGCCGAAGG-----ACGCTTCCT 123136 Query 794495 CTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTC 794532 ||| |||||||| | |||||| || ||||| ||| Sbjct 123135 GGTTGCTGATCCACGCGAACGCCCAATCGGCCTTCTTC 123098 >seq97 Length=72787 Score = 109 bits (120), Expect = 9e-18 Identities = 206/303 (68%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||| ||||| ||||| || |||| ||| || || |||||||| || |||||||| || Sbjct 69453 GCCCTGATCGACGTAGCGAGCAGTGTTGTTGAATACACGGAGCATCGGGACAAGGCCATT 69394 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| | ||| ||| || || | || || || | ||| || | ||||| | | Sbjct 69393 GGAGACTCCGCCGGTACCAGCAATGTGGGATCCAGTGGCACGGATGTTGTGAACATTGAG 69334 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 || ||||||||||| | ||| ||||| ||||| | |||| || ||| | ||||| Sbjct 69333 CCCAATGCCGCCGGCTGACTTTGAGATCTTTGCGCATTGCTTCAATGTGTCGAAAATGCC 69274 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||||| ||| || ||| | || ||||| ||||| | || || || | || Sbjct 69273 ATCGATGCTGTCATCCGACATAGTTAGCAAGAAGCAGGACGACATCTGAGGCCGAGGGGT 69214 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 || |||||||| || |||||||| || ||| || | | | ||||||| | ||| Sbjct 69213 ACCCGCATTGAACAGAGTGGGCGTGGCATGGGTGAACCAGCGCTCGGACATGAGATTGTA 69154 Query 2073837 GGT 2073839 ||| Sbjct 69153 GGT 69151 >seq319 Length=516904 Score = 104 bits (114), Expect = 4e-16 Identities = 206/300 (69%), Gaps = 15/300 (5%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || ||||||||||| ||||| | ||||||||| |||||||| ||| || ||| Sbjct 271888 AGACCGGGCATGAGACCGCGTTCCTTGAGCCAGAAGATGGCTGCGAAGGACCCGCTGAAG 271947 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 |||||||||||||||||||| || ||| || ||| ||| | || | || ||| Sbjct 271948 AAGATGCCCTCGACGGCGGCGAAAGCGATGACCCGTTCGCCGAAGGACGCC---TCCTGG 272004 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 ||| ||||||| | |||||| || ||||| ||| | | | || | | || |||| Sbjct 272005 TTGCTGATCCATGCGAACGCCCAATCGGCCTTCTTCTTGATGAACGGGAACTCGTAGATG 272064 Query 794557 GCG-CGAA-AG-AGGT---GGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGG 794610 ||| ||| || |||| | |||||||| ||| ||| || || | ||| || Sbjct 272065 GCGTTGAATAGCAGGTTGCGCTCCTTCTC------GTCGGTGATATACGTCTGGATCAGC 272118 Query 794611 AGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAGTTG 794670 | ||||| | | ||| |||||||||||||| | |||||||| || ||| | ||| Sbjct 272119 ATGGAGTACATTTGGCTGTGAATGTTTTCGATGGCCACTTGGAAGCCGTAGAAGAACTTG 272178 >seq911 Length=634982 Score = 100 bits (110), Expect = 5e-15 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 |||||||| ||||||||||||||| ||||||||| | ||||||||||| || ||| Sbjct 458445 GCCGCCAATTACCTCGACATCAAGGGCCTCCTCGACGTCACCTGCAAGACCGTAGCTAAC 458504 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | ||||| |||||| | ||||| || ||||| ||||| ||||||||| ||| Sbjct 458505 ATGATCAAAGGCAAGACCCCCGAAGAGATCCGTCGTACCTTCAACATCAAGAACG 458559 >seq680 Length=86569 Score = 100 bits (110), Expect = 5e-15 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||||||||| |||||||| |||||||||| |||||| |||||| ||| Sbjct 37669 TGTACTTTGTGACGGCCTTTGTACCCTCGCTGACGGCGTGCTTGGCCAATTCGCCTGGCA 37728 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCG-CTTGTTAGTG 1485588 ||||| || ||||| ||||||| || |||| |||||| || ||| || || Sbjct 37729 GAATCAGTCGGACGGCCGTCTGGACTTCCCGGGATGAGATCGT----CGACTTTTTGTTG 37784 Query 1485589 ---CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAG 1485645 | ||||| || |||||| || | | || |||| | ||| ||||| | Sbjct 37785 TATTGGGCCAGACGAGAGGCCTCATTGGCCAGACGCTCGAAGACATCGACCACAAAGCTG 37844 Query 1485646 TTCATGATCGACATCG 1485661 |||||||||||||||| Sbjct 37845 TTCATGATCGACATCG 37860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916146407912660