Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq806 136 3e-27 seq394 125 5e-24 seq793 84.2 1e-11 >seq806 Length=689343 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | ||| || ||||||| ||| | ||| |||||||||||||| ||||| || Sbjct 392180 CCGCCGCGCAATCTGAGGACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCGGAG 392239 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| || || ||||| ||||||||||| || || ||||| ||| | || Sbjct 392240 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 392299 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || |||||| | || | || |||| || Sbjct 392300 ATACCTTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAACCCTCAACT 392359 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| ||| ||||||||||| || |||||||| || |||||||||||| Sbjct 392360 TCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCATG 392407 Score = 120 bits (132), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| ||||| || || | || |||| || || ||||||||||||||| Sbjct 392672 TCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAG 392731 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || || |||||||| | || | || |||||||| | || || ||||| || Sbjct 392732 ATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--AT 392789 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | || || | || || || | ||| |||||||| || ||||||||||| | Sbjct 392790 TCTCAATAGTGTCGCTGCCTTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 392849 Query 34965 CAAAGATCTGCATG 34978 |||||||||||||| Sbjct 392850 CAAAGATCTGCATG 392863 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| |||||||| ||||| || || | |||| |||| Sbjct 392423 AGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGCTCAATGTGCGGCCATCC 392482 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || ||||||||||| | || | || ||||| || Sbjct 392483 TCGAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGAGGGATGCCTTCCTTATCT 392542 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | || || | || || || | ||| || ||| Sbjct 392543 TGAATCTTAGCCTTGACGTTTTCGATGGTGTCGCTGCCTTCAACTTCGAGGGTGATAGTC 392602 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || |||||||| ||||||||||||||| Sbjct 392603 TTTCCGGTAAGGGTCTTGACAAAGATCTGCATG 392635 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| ||||||||| ||||| ||||| | |||| |||| Sbjct 391739 AGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCACTCAATGTGCGGCCATCC 391798 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| ||||| || || ||||| ||| | || | || |||||||| Sbjct 391799 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 391858 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||| || || || || | || || | || || || | ||| || | Sbjct 391859 TGGATCTTGGCTTTCAC--ATTCTCGATGGTGTCGCTGCCTTCAACTTCCAGGGTGATCG 391916 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || |||||||| || |||||||||||| Sbjct 391917 TCTTGCCAGTAAGGGTCTTGACGAAGATCTGCATG 391951 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| |||||||| ||||| ||||| || ||| | || |||| Sbjct 391967 AGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCT 392026 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||||||||||| || || |||||| | || | || ||||| || Sbjct 392027 TCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCTTCCTTATCT 392086 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| |||||| | || | || | || || || | ||| || ||| Sbjct 392087 TGAATCTTTGCCTTGACGTTCTCGATGGTGTCTGATCCTTCAACTTCGAGGGTGATAGTC 392146 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || | || || || |||||||||||| Sbjct 392147 TTGCCAGTCAAAGTTTTCACGAAGATCTGCATG 392179 >seq394 Length=505719 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| |||||||| ||||| ||||| || | | | || |||| Sbjct 8991 AGGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCT 9050 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||| |||||||||| || ||||||||| | || | || ||||| || Sbjct 9051 TCCAACTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCTTCCTTATCC 9110 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || | ||||| |||| ||| |||||| Sbjct 9111 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGCCTTCGACCTCAAGGGTGATGGTC 9170 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || ||||||||||| Sbjct 9171 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 9202 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | ||| |||| |||| ||| | |||| |||||||| ||||| ||||| || Sbjct 9432 CCACCGCGCAATCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 9491 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | |||| |||| || || ||||| ||||||||||| || |||||||| ||| | || Sbjct 9492 AAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGG 9551 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || || |||||| | || | || || | ||||| Sbjct 9552 ATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCGCTGCCTTCGACT 9611 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| || ||||| || ||||||||||| || |||||||||||| Sbjct 9612 TCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 9659 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| ||||| || ||||| ||||| ||| |||| |||| Sbjct 8535 AGGACGAGATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCT 8594 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || |||||||||||| | || | || |||||||| Sbjct 8595 TCAAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 8654 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | || || | ||||| || | ||| || ||| Sbjct 8655 TGGATCTTGGCCTTGACGTTTTCAATGGTGTCGCTGCCTTCGACTTCGAGGGTAATCGTC 8714 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || ||||| ||||| Sbjct 8715 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 8746 Score = 122 bits (134), Expect = 6e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| |||| |||||||| ||||| ||||| || ||| | || |||| Sbjct 9959 AGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCC 10018 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||||| || ||||| || | || | || ||||| || Sbjct 10019 TCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCCGGGGGAATGCCTTCCTTATCC 10078 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | | || | || | |||| || || | ||| |||||| Sbjct 10079 TGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGCCCTCAACCTCGAGGGTGATGGTC 10138 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 |||||||| |||||||| || ||||| |||||||| Sbjct 10139 TTTCCCGTCAGGGTCTTGACGAAGATTTGCATGAT 10173 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | |||||| ||||||| ||| | ||| ||||| || ||||| ||||| || Sbjct 8748 CCACCACGCAACCTGAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAC 8807 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | || | || || || ||||| |||||||| || || |||||||||||| | || Sbjct 8808 AAAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGCTGGTCTGGGGGG 8867 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || |||||| | | || | || |||| || Sbjct 8868 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGAACCCTCAACT 8927 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| ||| || ||||| || || | |||||| ||||||||||||||| Sbjct 8928 TCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCATG 8975 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||||||||| ||||| ||||| ||| |||| |||| Sbjct 9219 AGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCT 9278 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || |||||||||||| | || | || |||||||| Sbjct 9279 TCAAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 9338 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | | ||||| || | || || ||| Sbjct 9339 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGCCTTCGACTTCCAAAGTGATAGTC 9398 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || | |||||| || |||||||||||| Sbjct 9399 TTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 9431 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| |||||||| || || |||||||||||| | || | || |||||||| | || || Sbjct 9799 CTTACCGGCGAAAATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTT 9858 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 |||||| | | || | ||| | | ||||| || | || |||||||| || || Sbjct 9859 GGCCTTGACGTTTTCGATGGTGTCAGAGCCTTCGACTTCCAAAGTGATGGTCTTGCCGGT 9918 Query 34954 GAGGGTCTTTACAAAGATCTGCATG 34978 ||||||||| || |||||||||||| Sbjct 9919 GAGGGTCTTGACGAAGATCTGCATG 9943 >seq793 Length=17056 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| || |||||||||| |||||||| || | || | || ||||| || | || || Sbjct 5317 CTTACCAGCGAAGATCAAACGTTGCTGATCCGGGGGAATGCCTTCCTTATCCTGGATCTT 5376 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 ||||| | | || | ||| |||||| || |||| ||| |||||||| || || Sbjct 5377 GGCCTTGACATTTTCGATGGTGTCAGAGGCCTCAACCTCAAGGGTGATGGTCTTGCCGGT 5436 Query 34954 GAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| || ||||||||||| Sbjct 5437 GAGGGTCTTGACGAAGATCTGCAT 5460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325689068781860