Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq394 109 5e-19 seq97 104 2e-17 seq806 100 3e-16 seq585 98.7 1e-15 >seq394 Length=505719 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || | ||||| |||||||| ||||| |||||||| ||||| Sbjct 8520 CCACCGCGCAGACGAAGGACGAGATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGCTG 8579 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| || || || || || |||| ||||||||||| || || || Sbjct 8580 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGA 8639 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| ||||| || || || | | ||| | ||||| || ||| ||| Sbjct 8640 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCGCTGCCTTCGACT 8699 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | |||||||||||| | || || ||||| ||||||||| Sbjct 8700 TCGAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATA 8747 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||||| | |||| ||||| || || || || Sbjct 9234 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCTTCAAGCTGCTTGCCG 9293 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| ||||||||||| || || || |||||||| ||||| || || || Sbjct 9294 GCGAAGATGAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTG 9353 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | ||| ||||| | ||| | |||||||| ||||| || Sbjct 9354 ACGTTCTCGATGGTGTCGGAGCCTTCGACTTCCAAAGTGATAGTCTTGCCAGTCAAGGTC 9413 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 9414 TTGACGAAGATCTGCAT 9430 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || || | ||| || || || | || ||||| || || |||||||| ||| Sbjct 9431 GCCACCGCGCAATCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 9490 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| || ||||| || || || || |||| |||||||||||||| || || Sbjct 9491 CAAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGG 9550 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || || || || | | || | ||||| || ||| || Sbjct 9551 GATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCGCTGCCTTCGAC 9610 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | || | |||||||||||| | || || ||||| || ||||| Sbjct 9611 TTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 9658 >seq97 Length=72787 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 151283 GCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCC 151342 || |||||||| ||||| || ||||| || || || |||| |||| || ||||| Sbjct 69935 GCGATCGACGCCAGATTGCAGACGGCGACCTCATCAGGGGCGCTGTATTCGACGATTTCG 69876 Query 151343 GCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAA 151402 | |||| ||||||||||| ||| |||| || || ||||| || |||||||| Sbjct 69875 GTGCACAGGTTGCTGCATTTGATCGTTCCGAGGTTCTGCTGGTTGCTCTTACGGTTGCAG 69816 Query 151403 GCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGA 151444 ||||| ||||| | |||||| || ||||| |||||| ||||| Sbjct 69815 GCGTCTTTGTAAAGCATGTAGGGGGTGCCAGTTTCGACTTGA 69774 >seq806 Length=689343 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | || | ||| || || | |||||||| || || |||||||||||||| Sbjct 392407 GCCACCGCGAAGTCGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGCT 392466 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||||| || ||||| || || || || |||| ||||||||||| || ||||| Sbjct 392467 CAATGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGAGG 392526 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| || || ||| || || | | ||| | ||||| || ||| || Sbjct 392527 GATGCCTTCCTTATCTTGAATCTTAGCCTTGACGTTTTCGATGGTGTCGCTGCCTTCAAC 392586 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | || | ||||| ||||| | || || || || || ||||| Sbjct 392587 TTCGAGGGTGATAGTCTTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 392634 >seq585 Length=222271 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 151283 GCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCC 151342 || |||||||| ||||| || ||||| || || ||||||| |||| || || || Sbjct 92013 GCGATCGACGCCAGATTGCAGACGGCGACCTCATCAGGCGCGCTGTATTCGACGATCTCG 92072 Query 151343 GCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAA 151402 | |||| ||||| ||||| ||| |||| || ||| ||||| || |||||||| Sbjct 92073 GTGCACAGGTTGCTACATTTGATCGTTCCGAGGTTCTGTTGGTTGCTCTTACGGTTGCAG 92132 Query 151403 GCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGA 151444 || || ||||| | |||||| || ||||||||||| ||||| Sbjct 92133 GCATCTTTGTAGACCATGTAGGGCGTGCCGGTTTCAACTTGA 92174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488538259608000