Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq806 127 5e-24 seq394 105 2e-17 >seq806 Length=689343 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || ||||| || ||||| | ||||| ||| | ||| Sbjct 392631 CAGATCTTTGTCAAGACCCTTACCGGAAAGACTATCACCCTCGAAGTTGAAGGCAGCGAC 392572 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| ||||||||||| || ||||| || |||||| ||| Sbjct 392571 ACCATCGAAAACGTCAAGGCTAAGATTCAAGATAAGGAAGGCATCCCTCCGGACCAGCAA 392512 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||||||||| |||||| | || ||||| | || ||| |||||||||| || Sbjct 392511 CGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACATTGAGCGATTACAACATC 392452 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || ||||| || ||| | ||| | ||||||| Sbjct 392451 CAGAAGGAATCTACCCTCCACTTGGTTCTCCGACTTCG 392414 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || ||||| | ||||| ||| | || ||||| |||| Sbjct 392163 AAAACTTTGACTGGCAAGACTATCACCCTCGAAGTTGAAGGATCAGACACCATCGAGAAC 392104 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||||||| || ||||| ||| || ||| || | | |||||| Sbjct 392103 GTCAAGGCAAAGATTCAAGATAAGGAAGGCATTCCCCCAGACCAACAGCGCTTGATCTTC 392044 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | |||||||| | || | |||| |||||| ||||||| || || Sbjct 392043 GCCGGAAAGCAGCTTGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAATCC 391984 Query 206365 ACTCTTCACCTTGT 206378 || || || || || Sbjct 391983 ACACTCCATCTCGT 391970 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || ||||| || ||||| | ||||| || |||| ||| Sbjct 392403 CAGATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTTGAAGTTGAGGGTTCAGAC 392344 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||||| || ||||| ||| || || || Sbjct 392343 ACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAGCAG 392284 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | |||||||| | || | |||| |||||| | Sbjct 392283 CGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATT 392224 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| || ||||| || ||| Sbjct 392223 CAGAAGGAATCTACCCTCCAC 392203 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||| | || || ||| | ||| Sbjct 392859 CAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAAGGCAGCGAC 392800 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || ||||| ||| |||||| || Sbjct 392799 ACTATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAGCAG 392740 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||||||||||||| | |||||||| | ||| | |||| |||||| || Sbjct 392739 CGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGTACTCTTTCCGACTACAACATC 392680 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || || || || || ||| | | ||||| Sbjct 392679 CAGAAGGAATCCACGCTCCATCTCGTTCTCCGTCTTCG 392642 >seq394 Length=505719 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || |||||||||||||| ||| | || ||| Sbjct 9427 CAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACTTTGGAAGTCGAAGGCTCCGAC 9368 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || ||||| ||| || ||| ||| Sbjct 9367 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAGCAA 9308 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | |||||||| | || | ||| |||||| || Sbjct 9307 CGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGCACCCTCAGCGACTACAACATC 9248 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || || || || Sbjct 9247 CAGAAGGAGTCGACCCTCCATCTCGT 9222 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || |||||||| | ||||| ||| | ||| Sbjct 9655 CAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTCGAAGGCAGCGAC 9596 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || ||||| || || || ||| Sbjct 9595 ACTATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAGCAA 9536 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || ||||| | |||||| |||| |||||| || Sbjct 9535 CGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAACATC 9476 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 ||||| || || || || ||| | || |||||| Sbjct 9475 CAGAAGGAATCCACCCTCCACTTGGTGTTGAGA 9443 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || ||||| || | ||||| ||| | ||||| | ||| Sbjct 8732 CAAGACCCTCACCGGCAAGACGATTACCCTCGAAGTCGAAGGCAGCGACACCATTGAAAA 8673 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| ||||| || ||||| ||| || ||| ||| | |||||||| Sbjct 8672 CGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAGCAACGTCTTATCTT 8613 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| |||||| | |||||||| | || | ||| |||||| |||| || || || Sbjct 8612 CGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCAGCGACTACAACATCCAAAAGGAATC 8553 Query 206364 TACTCTTCACCTTGT 206378 ||| ||||| || || Sbjct 8552 TACCCTTCATCTCGT 8538 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| | || || ||| | ||| Sbjct 9199 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAAGGCAGCGAC 9140 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| ||| || ||| || Sbjct 9139 ACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAGCAG 9080 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||| |||||||||||||||||||| | || ||| |||| |||||| || Sbjct 9079 CGCTTGATCTTCGCTGGAAAGCAGTTGGAAGATGGCCGTACCTTGTCCGACTACAACATC 9020 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| || || || || ||| Sbjct 9019 CAGAAGGAATCAACCCTCCAC 8999 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || |||||||||||||| ||| | |||||| Sbjct 9939 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTTTGGAAGTCGAAGGCTCTGAC 9880 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| ||||| ||||| || ||||| ||| || ||| ||| Sbjct 9879 ACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAGCAA 9820 Query 206293 AGACTTATCTTCGCCGGAAAG 206313 | ||||| |||||||| ||| Sbjct 9819 CGTCTTATTTTCGCCGGTAAG 9799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181806566445740