Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq585 197 1e-45 seq97 196 5e-45 seq806 104 2e-17 seq394 89.7 5e-13 >seq585 Length=222271 Score = 197 bits (218), Expect = 1e-45 Identities = 373/546 (68%), Gaps = 2/546 (0%) Strand=Plus/Plus Query 147452 GGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGC 147510 |||||| ||||| |||||||||||||||||||| ||| || |||| ||||||| | Sbjct 92005 GGTTCAACGCGATCGACGCCAGATTGCAGACGGCGACCTCATCAGGCG-CGCTGTATTCG 92063 Query 147511 ACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTC 147570 ||||| |||| |||||||||||| ||||| || ||| | || || || ||||| || Sbjct 92064 ACGATCTCGGTGCACAGGTTGCTACATTTGATCGTTCCGAGGTTCTGTTGGTTGCTCTTA 92123 Query 147571 CGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACG 147630 || ||||| || |||||| ||| |||||| || |||||| || ||||| | | || Sbjct 92124 CGGTTGCAGGCATCTTTGTAGACCATGTAGGGCGTGCCGGTTTCAACTTGAGAGCCGACA 92183 Query 147631 ATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTAC 147690 || | | ||||| | || | || | | || ||||| ||| ||||| Sbjct 92184 ATGTGCTTCCAAAGGTCACGGGCAAGGACTTGACGACGGTAGCGCTTTTCGGACTCGTAT 92243 Query 147691 CGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGC 147750 ||| | | |||||||||| ||||| ||||||| | || || ||||||| ||| Sbjct 92244 TTGGTGTAGAGCTGCTCAAACTCCTCGCCCCAGCAATCCTCGAGACCAGGACACTCATGG 92303 Query 147751 GGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACC 147810 || |||||||| ||||| | |||| | | ||||| ||| || ||||| || | | Sbjct 92304 GGGCACATCAGGGACCAGGTTCCGTCGGTTTCGACGCGCTTCATGAAGAGATCGGGGATC 92363 Query 147811 CACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAA 147870 || || ||||| | || || || || || ||||| || |||| || | | Sbjct 92364 CAGAGGGCGTAGAAGAGGTCACGGGCACGTTCTTCATCGGCACCAGTGTTCTTCTTGAGA 92423 Query 147871 TTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTA 147930 | || || | | |||||| |||||||| || | |||||||| | ||||| | Sbjct 92424 TCGAGGACTTCGAAAACGTCGGCATGCCAGGGCTCGAGATAGACGGCAAAGGCACCGGGA 92483 Query 147931 CGCTTTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCC 147990 ||||| ||||| |||| || | || || ||||||| || ||||| | ||| || | Sbjct 92484 CGCTTACCGCCTTGGTTGATGTAACGAGCCGTGTTGTTGAAGACGCGGAGCATCGGGACA 92543 Query 147991 AGGCCG 147996 |||||| Sbjct 92544 AGGCCG 92549 >seq97 Length=72787 Score = 196 bits (216), Expect = 5e-45 Identities = 458/687 (67%), Gaps = 13/687 (2%) Strand=Plus/Minus Query 147452 GGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCA 147511 |||||| ||||| |||||||||||||||||||| ||| || | | ||||||| | | Sbjct 69943 GGTTCAACGCGATCGACGCCAGATTGCAGACGGCGACCTCATCAGGGGCGCTGTATTCGA 69884 Query 147512 CGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCC 147571 ||||||||| |||||||||||||||||| || ||| | || ||||| ||||| || | Sbjct 69883 CGATTTCGGTGCACAGGTTGCTGCATTTGATCGTTCCGAGGTTCTGCTGGTTGCTCTTAC 69824 Query 147572 GATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGA 147631 | ||||| ||||||||| | |||||||| || ||| || |||||||| | | || Sbjct 69823 GGTTGCAGGCGTCTTTGTAAAGCATGTAGGGGGTGCCAGTTTCGACTTGAGCGCTGATGA 69764 Query 147632 TAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACC 147691 | | | || || | || | | ||| || | || ||| ||||| Sbjct 69763 TGTGCTTCCAGAGATCGCGAGCCTTGATCTGCTTTCGGAAACGCTTCTCCGACTCGTATT 69704 Query 147692 GCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCG 147751 | ||| | | ||| |||| ||||| |||| || |||| ||||| |||| || | Sbjct 69703 TCGTGTAGAGCTCCTCGAACTTCTCGCCCCAGCAGTCCTCAAGACCGGGGCACTCGTGGG 69644 Query 147752 GACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCC 147811 | |||||||| ||||| || |||| | | ||||| ||| || ||||| || | || Sbjct 69643 GGCACATCAGAGACCAGGTGCCGTCGGTTTCCACGCGCTTCATGAAAAGATCGGGGATCC 69584 Query 147812 ACAGCGCGTACATAAGATC----GCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGT-TT 147866 | || || || | ||||| || |||| | ||||| || ||| | | | | || Sbjct 69583 AGAGAGCATAGAAGAGATCACGGGCACGCTCT----TCCTCAGC-ACCACGATTCTTCTT 69529 Query 147867 CAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACC 147926 || || | || | ||||||| |||||||| ||||| | ||||| ||| | || || Sbjct 69528 CATATCCATGACCTCAAAGATGTCTGCGTGCCACGGTTCGAGGTAGATGGCGAAAGCGCC 69469 Query 147927 TTTACGC---TTTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCAT 147983 |||| ||||||||||| ||||| | ||| | ||||||| || || || | ||| Sbjct 69468 AGGACGCTTGTTTCCGCCCTGATCGACGTAGCGAGCAGTGTTGTTGAATACACGGAGCAT 69409 Query 147984 GGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCAC 148043 || | ||||| | | ||| ||| | || | | || ||| || | Sbjct 69408 CGGGACAAGGCCATTGGAGACTCCGCCGGTACCAGCAATGTGGGATCCAGTGGCACGGAT 69349 Query 148044 TTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA 148103 | ||| || || | |||||||||||| | ||||||| || ||||| | ||| Sbjct 69348 GTTGTGAACATTGAGCCCAATGCCGCCGGCTGACTTTGAGATCTTTGCGCATTGCTTCAA 69289 Query 148104 TGTCGTGTAGATGCCGTCGATGCTGTC 148130 ||| | | ||||| ||||||||||| Sbjct 69288 TGTGTCGAAAATGCCATCGATGCTGTC 69262 >seq806 Length=689343 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || ||||||||||| |||| || || ||| ||| Sbjct 391742 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCACTCAATGTGCGGCCATCCTCG 391801 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | |||| |||||||| |||||||| || |||||||| || || Sbjct 391802 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 391861 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||||| | || | || ||| | || ||||| | || | ||| || Sbjct 391862 ATCTTGGCTTTCACATTCTCGATGGTGTCGCTGCCTTCAACTTCCAGGGTGATCGTCTTG 391921 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || || || | ||| ||||||||| Sbjct 391922 CCAGTAAGGGTCTTGACGAAGATCTGCATG 391951 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||||||| | |||||| |||||| ||||| || |||| Sbjct 391985 GATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCAAGCTGCTTTCCGGCG 392044 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | |||||||| ||||| || |||||||| ||||| ||| ||| || | Sbjct 392045 AAGATCAAGCGCTGTTGGTCTGGGGGAATGCCTTCCTTATCTTGAATCTTTGCCTTGACG 392104 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | || ||||||| || | || || ||||||| |||||| Sbjct 392105 TTCTCGATGGTGTCTGATCCTTCAACTTCGAGGGTGATAGTCTTGCCAGTCAAAGTTTTC 392164 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 392165 ACGAAGATCTGCATG 392179 >seq394 Length=505719 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 ||||| | ||| ||||| || | | | || || || || |||||||||||| || || Sbjct 9438 CGCAATCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTG 9497 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| |||||||| || |||| |||| ||||| || |||||||| || || ||| Sbjct 9498 CGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGGATACCT 9557 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || ||||| || || || | | || | ||| ||| | || ||||||| Sbjct 9558 TCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCGCTGCCTTCGACTTCGAGG 9617 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| || || || || || || | ||| ||||||||| Sbjct 9618 GTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 9659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476605599818400