Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq394 118 9e-22 seq806 95.1 1e-14 >seq394 Length=505719 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || | ||||| || ||||||| |||||||||||| || Sbjct 9659 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTCGAAGGCAG 9600 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| ||||| ||| | || || || || ||||| || ||||| || || ||||| Sbjct 9599 CGACACTATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCA 9540 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | ||||| | || |||||| || ||||| |||| | | | | ||| ||||| Sbjct 9539 GCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAA 9480 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||||||| | || || ||||| |||||| | || || Sbjct 9479 CATCCAGAAGGAATCCACCCTCCACTTGGTGTTGAGATTGCGCGGTGG 9432 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| || |||| || |||||||||||| || | Sbjct 8746 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACGATTACCCTCGAAGTCGAAGGCAGC 8687 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || || || || || || || || || || ||| Sbjct 8686 GACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 8627 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || || | || |||||| || || ||||||| | | ||||||| ||||| Sbjct 8626 CAACGTCTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCAGCGACTACAAC 8567 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 || ||||| ||||| ||| ||||| Sbjct 8566 ATCCAAAAGGAATCTACCCTTCAT 8543 >seq806 Length=689343 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || || | |||||||| | ||||| ||||||| |||| || Sbjct 392635 CATGCAGATCTTTGTCAAGACCCTTACCGGAAAGACTATCACCCTCGAAGTTGAAGGCAG 392576 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || ||||| | || || || ||| ||||| || || || || || || || Sbjct 392575 CGACACCATCGAAAACGTCAAGGCTAAGATTCAAGATAAGGAAGGCATCCCTCCGGACCA 392516 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | || || | || |||||| || ||||| |||| | | | ||||||||||| Sbjct 392515 GCAACGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACATTGAGCGATTACAA 392456 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || || ||||| ||| | || || || Sbjct 392455 CATCCAGAAGGAATCTACCCTCCACTTGGT 392426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445089170140800