Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq895 181 2e-39 seq930 145 1e-28 seq697 145 1e-28 seq319 136 6e-26 seq441 118 2e-20 seq97 118 2e-20 seq585 98.7 1e-14 >seq895 Length=1000036 Score = 181 bits (200), Expect = 2e-39 Identities = 180/232 (78%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || || ||||||||||||||| |||| || |||||||| | || Sbjct 4805 ATCTACCGCGTCCTGAAGCAGGTGCACCCCGACACCGGTGTC---TCCTCCAA---GGCC 4752 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||| ||||||||| | |||| ||||||| || ||||||| Sbjct 4751 ATGTCGATCATGAACTCGTTCGTCAACGACGTCTTCGAGCGCATCGCCAACGAGGCCTCC 4692 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | | |||||||||| ||| ||| | ||||| |||||||| ||||| Sbjct 4691 CGTCTGGCCCAGTACAACAAGCGCTCCACCATCTCGAGCCGCGAAATCCAGACGGCCGTC 4632 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||| ||| ||| || || |||| ||||||||||||||| ||||||| Sbjct 4631 CGCCTCATCCTGCCCGGTGAGCTCGCCAAGCACGCCGTCTCCGAAGGCACCA 4580 Score = 105 bits (116), Expect = 1e-16 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 725010 CGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG 725069 ||||||| || ||||||| || ||||| | | |||||||||| ||||||| | Sbjct 155 CGCATCGCCAACGAGGCCTCCCGTCTGGCCCAGTACAACAAGCGCTCCACGATCTCGAGC 96 Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 || || |||||||| ||||| ||||| ||| | | ||| || || |||| |||||||||| Sbjct 95 CGTGAAATCCAGACGGCCGTCCGCCTCATCCTACCCGGTGAGCTCGCCAAGCACGCCGTC 36 Query 725130 TCCGAGGGCACCA 725142 ||||| ||||||| Sbjct 35 TCCGAAGGCACCA 23 Score = 100 bits (110), Expect = 4e-15 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 725010 CGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG 725069 ||||||| || ||||||| || ||||| | | |||||||||| |||||| | Sbjct 364 CGCATCGCCAACGAGGCCTCCCGTCTGGCCCAGTACAACAAGCGCTCTACGATCTCGAGC 305 Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 ||||| |||||||||||||| || || ||| ||| ||| || || |||| ||||||||| Sbjct 304 CGCGAAATCCAGACCGCCGTCCGACTCATCCTGCCCGGTGAGCTCGCCAAGCACGCCGTG 245 Query 725130 TCCGAGGGCACCA 725142 || || ||||||| Sbjct 244 TCTGAAGGCACCA 232 >seq930 Length=553560 Score = 145 bits (160), Expect = 1e-28 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || || |||||||| |||||| |||| || |||||||| | || Sbjct 469515 ATCTACCGTGTCCTGAAGCAGGTCCACCCCGACACCGGTGTC---TCCTCCAA---GGCC 469462 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||| || ||||||||| | |||| ||||||| || || ||| Sbjct 469461 ATGTCCATCATGAACAGCTTCGTCAACGACGTCTTCGAGCGCATCGCCAATGAAGCCTCG 469402 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | | |||||||||| || ||| | ||||| |||||||||||||| Sbjct 469401 CGTCTGGCCCAGTACAACAAGCGCTCGACCATCTCGAGCCGCGAAATCCAGACCGCCGTC 469342 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||| ||| ||| ||||| |||| |||||| ||||| || ||||||| Sbjct 469341 CGCCTCATCCTGCCCGGTGAACTCGCCAAGCACGCTGTCTCTGAAGGCACCA 469290 >seq697 Length=123847 Score = 145 bits (160), Expect = 1e-28 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || ||||||||||| || ||| || | || |||||||| | || Sbjct 63148 ATCTACCGCGTCCTCAAGCAGGTCCATCCCGACACTGGTGTC---TCCTCCAA---GGCC 63095 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| ||||| ||| | |||| ||||||| || ||| || Sbjct 63094 ATGTCCATCATGAACTCGTTCGTCAATGACGTCTTCGAACGCATCGCCAACGAAGCTTCC 63035 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | | |||||||||| ||| ||| | ||||| ||||||||||| || Sbjct 63034 CGCCTGGCCCAGTACAACAAGCGCTCCACCATCTCGAGCCGCGAAATCCAGACCGCTGTC 62975 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| | | ||| || || |||| |||||||||||| || ||||||| Sbjct 62974 CGTCTCATCCTCCCCGGTGAGCTCGCCAAGCACGCCGTCTCGGAAGGCACCA 62923 >seq319 Length=516904 Score = 136 bits (150), Expect = 6e-26 Identities = 252/363 (69%), Gaps = 19/363 (5%) Strand=Plus/Minus Query 1455922 GATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAG 1455981 || ||||| || ||| ||||||| || ||||| || || |||||| | | ||| Sbjct 272240 GACGGCATTGTCAACGAAAACCTGGTCGAACGCTTCTCCAAGGAAGTCCAAGTCACCGAG 272181 Query 1455982 GCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCG 1456041 || || || ||||| ||||| | |||||||||||||| ||| ||| ||||| Sbjct 272180 GCCAAGTTCTTCTACGGCTTCCAAGTGGCCATCGAAAACATTCACAGCCAAATGTACTCC 272121 Query 1456042 CTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACC---ACCT-CT-TTCG-C 1456095 | |||||| | || || ||| ||| |||||||| | |||| || ||| | Sbjct 272120 ATGCTGATCCAGACGTATATCACCGAC------GAGAAGGAGCGCAACCTGCTATTCAAC 272067 Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAAC 1456155 |||||| || | | |||| | | ||| |||||||| |||||| | ||||||| | Sbjct 272066 GCCATCTACGAGTTCCCGTTCATCAAGAAGAAGGCCGATTGGGCGTTCGCATGGATCAGC 272007 Query 1456156 AAGGAGG--GCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCAT 1456212 || ||| || || ||| | ||| ||| || ||| || ||||| ||||||||||| Sbjct 272006 AACCAGGAGGCGTC----CTTCGGCGAACGGGTCATCGCTTTCGCCGCCGTCGAGGGCAT 271951 Query 1456213 CTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||| ||| || ||| |||||||| ||||||||| | ||||| ||||||||||| Sbjct 271950 CTTCTTCAGCGGGTCCTTCGCAGCCATCTTCTGGCTCAAGGAACGCGGTCTCATGCCCGG 271891 Query 1456273 TCT 1456275 ||| Sbjct 271890 TCT 271888 >seq441 Length=50501 Score = 118 bits (130), Expect = 2e-20 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || |||||||| || || ||| |||| | | || | ||||| | || Sbjct 24405 ATCTACCGCGTCCTCAAGCAAGTCCATCCCGATACCG--GCGTCAGC-TCCAA---GGCC 24458 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||| || |||||||| | |||| || || | | | || || | Sbjct 24459 ATGTCCATCATGAACAGCTTCGTCAACGATGTCTTCGAGCGTATTGCCGCGGAAGCGTCT 24518 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | | ||||||||| ||| ||| | || || |||||||| ||||| Sbjct 24519 CGTCTGGCCCAGTACAACAAGCGATCCACCATCTCGAGCCGTGAAATCCAGACTGCCGTT 24578 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| ||| ||||||||| || | ||| ||||||||||||||||||| Sbjct 24579 CGACTCATCCTGCCCGGCGAACTCGCGAAGCATGCCGTCTCCGAGGGCACCA 24630 >seq97 Length=72787 Score = 118 bits (130), Expect = 2e-20 Identities = 208/303 (69%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 |||||| | |||||| ||| | ||||||| || |||||||| || || ||||| Sbjct 69151 ACCTACAATCTCATGTCCGAGCGCTGGTTCACCCATGCCACGCCCACTCTGTTCAATGCG 69210 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 || || || || || |||| ||||| ||||| || | ||| || || ||| Sbjct 69211 GGTACCCCTCGGCCTCAGATGTCGTCCTGCTTCTTGCTAACTATGTCGGATGACAGCATC 69270 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || ||||| | ||||| | ||||| ||||| ||||| ||| | ||||||||||| Sbjct 69271 GATGGCATTTTCGACACATTGAAGCAATGCGCAAAGATCTCAAAGTCAGCCGGCGGCATT 69330 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 || | | ||||| | || ||| | || || || | || || ||| ||| Sbjct 69331 GGGCTCAATGTTCACAACATCCGTGCCACTGGATCCCACATTGCTGGTACCGGCGGAGTC 69390 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||||| |||||||| || ||||| || || || ||| |||| || ||||||||||| ||| Sbjct 69391 TCCAATGGCCTTGTCCCGATGCTCCGTGTATTCAACAACACTGCTCGCTACGTCGATCAG 69450 Query 260183 TGC 260185 || Sbjct 69451 GGC 69453 Score = 87.8 bits (96), Expect = 3e-11 Identities = 86/109 (79%), Gaps = 4/109 (4%) Strand=Plus/Plus Query 262122 TCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGC 262181 |||| || ||||| ||||||||| | ||||| |||||| ||||| | |||||||||| Sbjct 69779 TCGAAACTGGCACCCCCTACATGCTTTACAAAGACGCCTGCAACCGTAAGAGCAACCAGC 69838 Query 262182 AGAACCTGGGCACCACGACAGAGGC--CAACCTGTGCACCGAGATCGTC 262228 ||||||| || || | || | || ||||||||||||||| |||||| Sbjct 69839 AGAACCTCGGAACGA--TCAAATGCAGCAACCTGTGCACCGAAATCGTC 69885 >seq585 Length=222271 Score = 98.7 bits (108), Expect = 1e-14 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 262105 CATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAA 262164 |||||||| | || | || |||||||||||||||||||||||||| || ||| ||| Sbjct 92186 CATTGTCGGCTCTCAAGTTGAAACCGGCACGCCCTACATGGTCTACAAAGATGCCTGCAA 92127 Query 262165 CCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAACCTGTGCACCGAGAT 262224 || | |||||||| |||||||| || || | | | |||||||||||||||||| Sbjct 92126 CCGTAAGAGCAACCAACAGAACCTCGGAACGATCAAATGTAGCAACCTGTGCACCGAGAT 92067 Query 262225 CGTC 262228 |||| Sbjct 92066 CGTC 92063 Score = 96.9 bits (106), Expect = 5e-14 Identities = 117/157 (75%), Gaps = 7/157 (4%) Strand=Plus/Plus Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGG--GCCTCGACACTTTGCCG 1456179 ||| |||||||| |||||| | |||||||| ||| ||| || || ||| | || Sbjct 123098 GAAGAAGGCCGATTGGGCGTTCGCGTGGATCAGCAACCAGGAAGCGTC----CTTCGGCG 123153 Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCA 1456238 | ||| || ||| ||| || || |||||||||||||| ||| || ||| |||| Sbjct 123154 AACGGGTCATCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGGTCCTTCGCGGCCA 123213 Query 1456239 TCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||| ||||||||| | ||||| |||||||||||||| Sbjct 123214 TCTTCTGGCTCAAGGAACGCGGTCTCATGCCCGGTCT 123250 Score = 86.0 bits (94), Expect = 9e-11 Identities = 109/145 (75%), Gaps = 9/145 (6%) Strand=Plus/Minus Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGG--GCCTCGACACTTTGCCGAGCGGCTCGTCGG 1456192 |||||| | |||||||| ||| ||| || || ||| | ||| ||| || ||| Sbjct 95383 TGGGCGTTCGCGTGGATCAGCAACCAGGAAGCGTC----CTTCGGCGAACGGGTCATCGC 95328 Query 1456193 CTTTGCCGC-GTCGAGGGCATCTTTTTCT-CGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||| ||||| |||||||||||||| ||| |||| ||| | |||||||| ||||| | Sbjct 95327 CTTCGCCGCCGTCGAGGGCATCTTCTTCAGCGGGTCCTTTGCG-GCCATCTTCTGGCTTA 95269 Query 1456251 AGAAGCGCGGCCTCATGCCCGGTCT 1456275 || | ||||| |||||||||||||| Sbjct 95268 AGGAACGCGGTCTCATGCCCGGTCT 95244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177720535272280