Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq806 102 7e-17 seq394 96.9 3e-15 >seq806 Length=689343 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| | || || | || || |||||||| || || || Sbjct 392672 TCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAG 392731 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||||| |||| || ||||||||| |||||| ||| | | | Sbjct 392732 ATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTC 392791 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| ||| ||||| | ||||| || || || || | || |||||| Sbjct 392792 TCAATAGTGTCGCTGCCTTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACA 392851 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 392852 AAGATCTGCAT 392862 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| | ||| || | || || |||||||| || || || Sbjct 391988 TCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAG 392047 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||| ||||| | |||| || ||||| || |||||| ||| | | Sbjct 392048 ATCAAGCGCTGTTGGTCTGGGGGAATGCCTTCCTTATCTTGAATCTTTGCCTTGACGTTC 392107 Query 35666 GCCACCGTGTC-GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | || ||| || || | ||||| || || || |||||||||||||| Sbjct 392108 TCGATGGTGTCTGATCC-TTCAACTTCGAGGGTGATAGTCTTGCCAGTCAAAGTTTTCAC 392166 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 392167 GAAGATCTGCAT 392178 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| ||||| || |||||||||||| ||| || || | || || Sbjct 392426 ACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGCTCAATGTGCGGCCATCCTCG 392485 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || || || || | || |||||||||| ||| | || ||||| || Sbjct 392486 AGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGAGGGATGCCTTCCTTATCTTGA 392545 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||| | || | | |||||||| ||| || || | ||||| || || Sbjct 392546 ATCTTAGCCTTGACGTTTTCGATGGTGTCGCTGCCTTCAACTTCGAGGGTGATAGTCTTT 392605 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | || || ||||| |||||||| Sbjct 392606 CCGGTAAGGGTCTTGACAAAGATCTGCAT 392634 >seq394 Length=505719 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| |||||| || | || |||| |||||| || || || Sbjct 9012 TCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCTTCCAACTGCTTTCCAGCGAAG 9071 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||||||||| | |||| | ||||| ||| |||||| ||| | | Sbjct 9072 ATCAAGCGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTC 9131 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| ||| ||||| | ||||| || || || || | || || || Sbjct 9132 TCGATGGTGTCGCTGCCTTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACG 9191 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 9192 AAGATCTGCAT 9202 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || || ||||||||||| || | || ||||| || |||||||| |||| | Sbjct 9432 CCACCGCGCAATCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 9491 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || |||||||| || || || || | || ||||| || | || Sbjct 9492 AAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGG 9551 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | | | |||||||| ||| || Sbjct 9552 ATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCGCTGCCTTCGACT 9611 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||||| || || || | || || || || |||||||| Sbjct 9612 TCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 9658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450788303175200