Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq585 123 3e-23 seq806 122 9e-23 seq394 122 9e-23 seq97 118 1e-21 >seq585 Length=222271 Score = 123 bits (136), Expect = 3e-23 Identities = 365/549 (66%), Gaps = 14/549 (3%) Strand=Plus/Minus Query 7882 CCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAAGCGCAAA 7941 || ||| | ||||| ||||| ||| ||| || | | |||| || || ||||| Sbjct 92539 CCGATGCTCCGCGTCTTCAACAACACGGCTCGTTACATCAACCAAGGCGGTAAGCGTCCC 92480 Query 7942 GGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTG 8001 || ||| |||| ||||| | ||||| ||||| || ||| ||| || ||| || |||| Sbjct 92479 GGTGCCTTTGCCGTCTATCTCGAGCCCTGGCATGCCGACGTTTTCGAAGTCCTCGATCTC 92420 Query 8002 CGTCGCAACATGGGTTGCGAAGACAGCAAA-GCGCGCGATCTATTCTTCGGATTGTGGGT 8060 |||| ||| ||| || || | || || || || |||| || | ||| | Sbjct 92419 AAGAAGAACACTGGTGCCGATGA-AGAACGTGCCCGTGACCTCTTCTACGCCCTCTGGAT 92361 Query 8061 GCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGA 8120 |||||||| || |||| |||||| | ||||| | ||||| || ||||||||| | Sbjct 92360 CCCCGATCTCTTCATGAAGCGCGTCGAAACCGACGGAACCTGGTCCCTGATGTGCCCCCA 92301 Query 8121 TCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAA--AATTTGAACAATTGTACAAACAA 8178 | || ||| | | | || || | | | ||||| || | |||| || Sbjct 92300 TGAGTGTCCTGGTCTCGAGGA--TTGCTGGGGCGAGGAGTTTGAGCAGCTCTACACCAAA 92243 Query 8179 TACGAACACGACG-GCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCT--GCACCGCGCC 8235 ||||| ||| |||| ||| || ||||| || || ||||| | | || | Sbjct 92242 TACGAGTCCGAAAAGCGCTACCGT-CGTCAAGTCCTTGCCCGTGACCTTTGGAA-GCAC- 92186 Query 8236 ATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAAC 8295 ||| ||| | |||| |||||||| | ||| |||||| | |||||||| || |||||| Sbjct 92185 ATTGTCGGCTCTCAAGTTGAAACCGGCACGCCCTACATGGTCTACAAAGATGCCTGCAAC 92126 Query 8296 GCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATT 8355 || ||||| ||| ||| | || || || || ||||| |||||| | || || Sbjct 92125 CGTAAGAGCAACCAACAGAACCTCGGAACGATCAAATGTAGCAACCTGTGCACCGAGATC 92066 Query 8356 GTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGT-GTGTTTAAA 8414 || | ||||||||||| || || || ||||| |||||||| |||||| | | ||| || Sbjct 92065 GTCGAATACAGCGCGCCTGATGAGGTCGCCGTCTGCAATCTGGCGTCGATCGCGTTGAAC 92006 Query 8415 CGCGTTCGT 8423 ||| ||||| Sbjct 92005 CGC-TTCGT 91998 >seq806 Length=689343 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || ||||||||||| || |||||||||||| Sbjct 391952 CCACCACGGAGACGGAGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAG 392011 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| || || || || ||||| ||||| || || || || Sbjct 392012 AGGGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGA 392071 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || |||||||| ||| ||||| || | ||||| || ||| || Sbjct 392072 ATGCCTTCCTTATCTTGAATCTTTGCCTTGACGTTCTCGATGGTGTCTGATCCTTCAACT 392131 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || |||||||| ||||| || ||||| Sbjct 392132 TCGAGGGTGATAGTCTTGCCAGTCAAAGTTTTCACGAAGATCTGCAT 392178 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || |||||||| ||||||||||||||| | |||| | || || ||||| Sbjct 392203 GTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTG 392262 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || || | |||||||||||| || || || ||||| || |||||||| || Sbjct 392263 CTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTT 392322 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| || | ||||| || || || || || || ||||| || ||||| Sbjct 392323 AGCCTTGACGTTCTCAATGGTGTCTGAACCCTCAACTTCAAGGGTGATGGTCTTTCCGGT 392382 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| || ||||| Sbjct 392383 AAGGGTCTTGACGAAGATCTGCAT 392406 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || ||||| | |||||| | || | ||| || || || ||||| || ||||||||||| Sbjct 391721 TTACCTCCACGGAGTCGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCA 391780 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| | || |||||||| ||||| ||||| || | |||||||||||| || Sbjct 391781 CTCAATGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGG 391840 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || || || || || ||| || || | |||||| ||| Sbjct 391841 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGCCTTCA 391900 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || || | || || ||||| || ||||| Sbjct 391901 ACTTCCAGGGTGATCGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 391950 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || |||||||||||||| || |||||||||||| || || | || || Sbjct 392654 ACGAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCA 392713 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || || || || | ||||||||| || || || |||||||| || || || Sbjct 392714 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGG 392773 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| || | |||||| ||| || ||||| || ||||| || Sbjct 392774 ATCTTGGCCTTGACATTCTCAATAGTGTCGCTGCCTTCAACCTCGAGGGTGATGGTCTTG 392833 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || || || || ||||| Sbjct 392834 CCAGTGAGGGTCTTCACAAAGATCTGCAT 392862 >seq394 Length=505719 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || ||||||||||| || |||||||||||| Sbjct 9944 CCACCGCGGAGACGGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 10003 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| ||||| || || ||||||||||||||||| || || Sbjct 10004 AGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCCGGGGGA 10063 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | |||||||| || || Sbjct 10064 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGCCCTCAACC 10123 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || | || || ||||| |||||||| Sbjct 10124 TCGAGGGTGATGGTCTTTCCCGTCAGGGTCTTGACGAAGATTTGCAT 10170 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || || || ||||||||||| ||||||||||||| | |||| | || || Sbjct 8538 ACGAGATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCTTCA 8597 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || || | ||| ||||| || || || |||||||| || ||||| Sbjct 8598 AGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 8657 Query 134625 ATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || |||| || | |||| |||||| ||| || ||||| ||||| || || Sbjct 8658 ATCTTGGCCTTGA-CGTTTTCAATGGTGTCGCTGCCTTCGACTTCGAGGGTAATCGTCTT 8716 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || || ||||| |||||||| Sbjct 8717 GCCGGTGAGGGTCTTGACGAAGATTTGCAT 8746 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || || || || ||||| || ||||||||||||| | |||| || || || Sbjct 9222 ACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCTTCA 9281 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || || | ||| ||||| || || || |||||||| || ||||| Sbjct 9282 AGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 9341 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| || | |||||||| ||| || || | ||| || || || Sbjct 9342 ATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGCCTTCGACTTCCAAAGTGATAGTCTTG 9401 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || ||||| Sbjct 9402 CCAGTCAAGGTCTTGACGAAGATCTGCAT 9430 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 134498 TCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGA 134557 || |||||| | ||| || ||||||||||| || |||||||||||| | ||| | Sbjct 9443 TCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCC 9502 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || |||||||| ||||| || || || | ||| |||||||| || || || ||||| || Sbjct 9503 ATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGGATACCTTCCTT 9562 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || || || || ||||| || | |||||| ||| || ||||| || || Sbjct 9563 ATCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCGCTGCCTTCGACTTCGAGGGTGAT 9622 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| | || || ||||| || ||||| Sbjct 9623 CGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 9658 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || ||||||||||| |||||||||||| | || | ||| |||||||| Sbjct 8771 GTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTCTTCGAGCTG 8830 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || ||||| | ||| ||||| || || || || ||||| || ||||| || || Sbjct 8831 CTTGCCGGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTT 8890 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| || | |||||||| || || || || || || || || || || Sbjct 8891 GGCCTTGACGTTTTCGATGGTGTCGGAACCCTCAACTTCAAGGGTGATAGTCTTGCCAGT 8950 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || ||||| Sbjct 8951 CAAGGTCTTGACAAAGATCTGCAT 8974 >seq97 Length=72787 Score = 118 bits (130), Expect = 1e-21 Identities = 479/739 (65%), Gaps = 23/739 (3%) Strand=Plus/Plus Query 7698 GCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTA 7757 |||||| |||| || || || |||||||| ||| || ||||||||||| ||||||| Sbjct 69222 GCCTCAGATGTCGTCCTGCTTCTTGCTAACTATGTCGGATGACAGCATCGATGGCATTTT 69281 Query 7758 CAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGT 7817 | |||| || | ||||| || || || || | | |||||| || || || || || Sbjct 69282 CGACACATTGAAGCAATGCGCAAAGATCTCAAAGTCAGCCGGCGGCATTGGGCTCAATGT 69341 Query 7818 AAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTT 7877 || || | || |||| || || ||| | ||| |||| ||| || | Sbjct 69342 TCACAACATCCGTGCCACTGGATCCCACATTGCTGGTACCGGCGGAGTCTCCAATGGCCT 69401 Query 7878 AGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAA--- 7934 | || ||| | || || ||||| ||| | | || | || || ||||| ||||| Sbjct 69402 TGTCCCGATGCTCCGTGTATTCAACAACACTGCTCGCTACGTCGATCAGGGCGGAAACAA 69461 Query 7935 GCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCT 7994 ||| ||||| |||||||| | || ||||||||||| ||||| | | || | Sbjct 69462 GCGTCCTGGCGCTTTCGCCATCTACCTCGAACCGTGGCACGCAGACATCTTTGAGGTCAT 69521 Query 7995 AAATCTGC-GTCGCAACATGG-GTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGA 8052 || || | | | | ||| | || | | | ||| || || ||||| |||| | Sbjct 69522 GGATATGAAGAAGAATCGTGGTGCTGAGGA-AGAGCGT-GCCCGTGATCTCTTCTATGCT 69579 Query 8053 TTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACG-CACAATGGTCGCTCAT 8111 | ||| | |||||||| || |||| |||||| | ||||| ||| ||||| || || Sbjct 69580 CTCTGGATCCCCGATCTTTTCATGAAGCGCGTGGAAACCGACGGCACC-TGGTCTCTGAT 69638 Query 8112 GTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTA 8171 ||||||| | ||||| | | || | || || || || | | || Sbjct 69639 GTGCCCCCACGAGTGCCCCGGTCTTGAGGACTGCTGGGGCGAGAAGTTCGAGGAGCTCTA 69698 Query 8172 CAAACAATACGAACACGACGGCGCGTACGTGCG---GCAAGTGAAAGCGCGCGACCT--- 8225 || ||||||| || | |||| | || ||| | || || ||||| || Sbjct 69699 CACGAAATACGAGTCGGA-GAAGCGTT--TCCGAAAGCAGATCAAGGCTCGCGATCTCTG 69755 Query 8226 GCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGA 8285 | | | | ||| | || |||| |||||| || | || |||||||| |||||||| Sbjct 69756 GAAGCACATCATCAGCGC---TCAAGTCGAAACTGGCACCCCCTACATGCTTTACAAAGA 69812 Query 8286 CGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTG 8345 ||| |||||| || ||||| || ||| | || || || |||||||| ||||| Sbjct 69813 CGCCTGCAACCGTAAGAGCAACCAGCAGAACCTCGGAACGATCAAATGCAGCAACCTGTG 69872 Query 8346 CGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGT 8405 | | ||||| || | |||||||| || || || || ||||| |||||||| |||||| | Sbjct 69873 CACCGAAATCGTCGAATACAGCGCCCCTGATGAGGTCGCCGTCTGCAATCTGGCGTCGAT 69932 Query 8406 -GTGTTTAAACGCGTTCGT 8423 | ||| || ||| ||||| Sbjct 69933 CGCGTTGAACCGC-TTCGT 69950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505392461568800