Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq394 125 6e-24 seq806 113 4e-20 >seq394 Length=505719 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||||| | ||||| || | ||||| || ||||| || ||||||||| | Sbjct 8748 CCACCACGCAACCTGAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAC 8807 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||||||||| || |||||| |||||||||| || || || || || Sbjct 8808 AAAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGCTGGTCTGGGGGG 8867 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || || || ||||||| || | | |||| | ||||| | | |||||| Sbjct 8868 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGAACCCTCAACT 8927 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||| ||||| |||| || || |||||||| ||||| Sbjct 8928 TCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 8974 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 || || ||||||| || | || | ||| | ||||| || ||||| || ||||||||| Sbjct 8517 TTACCACCGCGCAGACGAAGGACGAGATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCG 8576 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | | |||| | ||||| ||||| || |||||| | || ||||| || || || || Sbjct 8577 CTGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGG 8636 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || || || || ||||||| || | | |||| | ||||| || |||| Sbjct 8637 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCGCTGCCTTCG 8696 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| || || || | ||||| || || || || || |||||||||||| Sbjct 8697 ACTTCGAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATA 8747 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||||| | | |||| | ||||| ||||| || ||| Sbjct 9234 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCTTCAAGCTGCTTGCCG 9293 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | |||||||| || || || || || | || || || || ||||||| || Sbjct 9294 GCGAAGATGAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTG 9353 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | |||| ||||| | ||| |||| ||||| |||| || Sbjct 9354 ACGTTCTCGATGGTGTCGGAGCCTTCGACTTCCAAAGTGATAGTCTTGCCAGTCAAGGTC 9413 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 9414 TTGACGAAGATCTGCAT 9430 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | || | ||||| || | || || || || || || ||||||||| Sbjct 9942 TGCCACCGCGGAGACGGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 10001 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || | || |||||||| || || ||| | || | |||||| |||||||| | Sbjct 10002 AGAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCCGGGG 10061 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| ||||||| || | |||| | ||||| | | | |||| Sbjct 10062 GAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGCCCTCAA 10121 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | || |||||||| || || || ||||||||||| Sbjct 10122 CCTCGAGGGTGATGGTCTTTCCCGTCAGGGTCTTGACGAAGATTTGCAT 10170 >seq806 Length=689343 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 || ||||| || | || | ||||| || | ||||| || || || || |||||||| Sbjct 391721 TTACCTCCACGGAGTCGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCA 391780 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 |||| |||| | || |||||||| || ||||| | ||||||||||| ||||| || Sbjct 391781 CTCAATGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGG 391840 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || || || || ||||||| ||||| | || | ||||| || ||||| Sbjct 391841 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGCCTTCA 391900 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || || | ||||| || || || || || ||||| ||||| Sbjct 391901 ACTTCCAGGGTGATCGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 391950 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| |||||||| | | ||||| || | ||||| || || ||||| ||||||||| Sbjct 392178 TGCCGCCGCGCAATCTGAGGACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCGG 392237 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | ||||| ||||| || |||||| | ||||||||||| ||||| || | Sbjct 392238 AGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGG 392297 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| || || || ||||| || | | | || | ||||||| | |||| Sbjct 392298 GAATACCTTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAACCCTCAA 392357 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || || | || || || || || || || ||||| ||||| Sbjct 392358 CTTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 392406 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | || | || | ||| | ||| || || || || || ||||||||| Sbjct 392634 TGCCACCGCGAAGACGGAGAACGAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGG 392693 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || | ||||| ||||| || |||||| | ||||||||||| || ||||| | Sbjct 392694 AAAGAGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGG 392753 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| || | | || | |||||| || |||||| Sbjct 392754 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATAGTGTCGCTGCCTTCAA 392813 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || || || ||||||||||| ||||| Sbjct 392814 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 392862 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| ||| | ||||||||||| |||||||| || | || || || || ||||||| Sbjct 393006 TTACCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTTG 393065 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 || | |||| | ||||||| | ||||||| || || || || | ||||| || Sbjct 393066 GCCTTGACATTTTCAATGGTGTCTGAGCCTTCAACCTCAAGGGTGATGGTCTTGCCGGTA 393125 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || ||||| ||||| Sbjct 393126 AGAGTCTTGACGAAGATCTGCAT 393148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424929531845280