Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq585 100 4e-16 seq319 84.2 3e-11 >seq585 Length=222271 Score = 100 bits (110), Expect = 4e-16 Identities = 485/763 (64%), Gaps = 14/763 (2%) Strand=Plus/Plus Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 ||||| || |||| |||||| || || |||||| | |||| || | || || Sbjct 92013 GCGATCGACGCCAGATTGCAGACGGCGACCTCATCAGGCGCGCTGTATTCGACGATCTCG 92072 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || | |||| || || ||||| || | |||| |||||| ||||| |||||| Sbjct 92073 GTGCACAGGTTGCTACATTTGATCGTTCCGAGGTTCTGTTGGTTGCTCTTACGGTTGCAG 92132 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 ||||| ||||||| |||||||||||| || || || || || || ||| |||| Sbjct 92133 GCATCTTTGTAGACCATGTAGGGCGTGCCGGTTTCAACTTGAGAGCCGACAATGTGCTTC 92192 Query 111416 CAAACATCGGCGGCTGGTAC--AATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGT 111473 |||| || ||| | || | | || | || | | || | |||||| || |||| Sbjct 92193 CAAAGGTCACGGGCAAGGACTTGACGACGGTAGCGCTT--TTCGGACTCGTATTTGGTGT 92250 Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAG 111532 |||| ||||||||||| ||| | || || |||||| || || | || || Sbjct 92251 AGAGCTGCTCAAACTCCTCGCCC-CAGCAATCCTCGAGACCAGGACACTCATGGGGGCAC 92309 Query 111533 AAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 111592 | || ||||| || | || || ||||||||||| || || || ||||| ||| Sbjct 92310 ATCAGGGACCAGGTTCCGTCGGTTTCGACGCGCTTCATGAAGAGATCGGGGATCCAGAGG 92369 Query 111593 GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAG 111651 | | ||||| || | || | || ||| |||| ||| || | | || || Sbjct 92370 GCGTAGAAGAGGTCACGGGCACGTTCTTCATCGGCACCAGTGTT-CTTCTTGAGATCGAG 92428 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACG 111711 || || | | || || ||||| ||||| |||||||| || | | || |||| Sbjct 92429 GACTTCGAAAACGTCGGCATGCCAGGGCTCGAGATAGACGGCAAAGGCACC---GGGACG 92485 Query 111712 C---CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 111768 | || |||| || | || || || ||| ||| || ||||| ||||| || | || Sbjct 92486 CTTACCGCCTTGGTTGATGTAACGAGCCGTGTTGTTGAAGACGCGGAGCATCGGGACAAG 92545 Query 111769 ACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGAT 111828 || | || ||| || || | ||| | | ||| | | | |||| Sbjct 92546 GCCGTGCGAGATGCCACCAGTGCCAGCGACACGGGTTCCGGCGGCACGGATGTTGTGGAC 92605 Query 111829 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 111888 || || || || || ||||| |||| ||| | ||||||| | | || || | | Sbjct 92606 GTTGATGCCGATGCCACCAGCGGACTTGCTGATGCGAGCACACTGCTTCAGGGTGTCGAA 92665 Query 111889 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 111948 ||| || | | |||||||| ||| | |||||||| |||||||| || | Sbjct 92666 GATGCCTTCAACGGAGTCCTCTGACATGGTCAACAGGAAGCAGGACGACATCTGAGGCCG 92725 Query 111949 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 111991 || ||||| |||||||| || || || || || ||| ||||| Sbjct 92726 AGGGGTACCCGCATTGAACAGTGTGGGCGTGGCATGAGTGAAC 92768 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || | || || |||||||| |||||||| || ||||| ||| | ||||| Sbjct 95190 GCAAAATCGCGATGAAGGCCCTCATCACGGGAAATGAGCTCATTGGAGTGGGTCAGACCG 95249 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| || | ||| | ||| | || | |||| || |||||| ||||||||| Sbjct 95250 GGCATGAGACCGCGTTCCTTAAGCCAGAAGATGGCCGCA-AAGGACCCGCTGAAGAAGAT 95308 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 ||||| || || || || | | |||||| ||||||| Sbjct 95309 GCCCTCGACGGCGGCGAAGGCGATGACCCGTTCGCCGAAGGA 95350 Score = 82.4 bits (90), Expect = 1e-10 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 |||||||| |||||||| || ||||| ||| | ||||| ||||||||||| || | | Sbjct 123286 CCCTCATCACGGGAAATGAGCTCATTGGAGTGGGTCAGACCGGGCATGAGACCGCGTTCC 123227 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || || ||| |||||| ||||||||| ||||| || || || Sbjct 123226 TTGAGCCAGAAGATGGCCGCGAAGGACCCGCTGAAGAAGATGCCCTCGACGGCAGCGAAG 123167 Query 122797 GCAAAAAGGCGTTCGGCGAAGGA 122819 || | | |||||| ||||||| Sbjct 123166 GCGATGACCCGTTCGCCGAAGGA 123144 >seq319 Length=516904 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || | || || |||||||| ||||| || || ||||| ||| | ||||| Sbjct 271834 GCAAAGTCGCGATGAAGGCCCTCATCACGGGAGATGAGCTCATTGGAGTGGGTCAGACCG 271893 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||||||||| || | ||| | ||| | || || ||| |||||| ||||||||| Sbjct 271894 GGCATGAGACCGCGTTCCTTGAGCCAGAAGATGGCTGCGAAGGACCCGCTGAAGAAGATG 271953 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 ||||| || || || || | | |||||| ||||||| Sbjct 271954 CCCTCGACGGCGGCGAAAGCGATGACCCGTTCGCCGAAGGA 271994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024620624000