Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq585 87.8 2e-12 seq319 87.8 2e-12 seq491 86.0 8e-12 seq402 86.0 8e-12 >seq585 Length=222271 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || | || || ||||| |||||||| ||||| ||||| ||| | |||||| Sbjct 95190 GCAAAATCGCGATGAAGGCCCTCATCACGGGAAATGAGCTCATTGGAGTGGGTCAGACCG 95249 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||||||||| || | ||| | |||||| || || ||| || || ||||||||| Sbjct 95250 GGCATGAGACCGCGTTCCTTAAGCCAGAAGATGGCCGCAAAGGACCCGCTGAAGAAGATG 95309 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 ||||| || ||||| || | || || || | ||||| Sbjct 95310 CCCTCGACGGCGGCGAAGGCGATGACCCGTTCGCCGAAGGA 95350 >seq319 Length=516904 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || | || || ||||| |||||||||||||| ||||| ||| | |||||| Sbjct 271834 GCAAAGTCGCGATGAAGGCCCTCATCACGGGAGATGAGCTCATTGGAGTGGGTCAGACCG 271893 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||||||||| || | ||| | |||||| || || || || || ||||||||| Sbjct 271894 GGCATGAGACCGCGTTCCTTGAGCCAGAAGATGGCTGCGAAGGACCCGCTGAAGAAGATG 271953 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 ||||| || ||||| || | || || || | ||||| Sbjct 271954 CCCTCGACGGCGGCGAAAGCGATGACCCGTTCGCCGAAGGA 271994 >seq491 Length=111361 Score = 86.0 bits (94), Expect = 8e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 179955 CTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAAC 180014 ||| ||||| || ||||| ||||| ||| |||| ||||| | ||||| || || || || Sbjct 65715 CTTACCACGAAGCGGGAAGACACCATAGCGATCGCGACCGATGACAGACAGGCCTGCGAC 65656 Query 180015 TGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACA 180059 ||||||||||| ||||| || || || |||| ||| ||||| || Sbjct 65655 GGCGAGGGTCTTGGCGGAGTCTCCTTCGGTCAGGATTAGCGTGCA 65611 >seq402 Length=45079 Score = 86.0 bits (94), Expect = 8e-12 Identities = 255/383 (67%), Gaps = 14/383 (4%) Strand=Plus/Minus Query 14056 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 14115 ||||| |||||| || |||||||| || || | || | || | || || | || || Sbjct 33365 GATCTGACGATCGAATCGACCTGGTCGAAGCAAAGCCTTATCCAAAATGTCGACACGATT 33306 Query 14116 CGTCGCCGCGATGAC---AACGATGCC--CGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 |||||||| || || ||| || | || ||| | ||| || ||||| ||| Sbjct 33305 TGTCGCCGCAATCACGATAACCGAGCTTTCATC-CGTCGTGAAA-CCGTCCATTTCAACG 33248 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACC-CGCACTGCG 14229 | || ||||| | ||| | ||| | || || || ||| ||||| ||| | || Sbjct 33247 AGCAGCTGATTCAAGGTGTTTTCCTGCTCGGAATGACCACCCATGCCACCACGCCC-GCC 33189 Query 14230 TTGCTTAC---CGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACG 14286 |||||| | ||||| ||||||||||||||||| | ||| || || || | ||| Sbjct 33188 ACGCTTACGACCAACGGCATCAATTTCATCGATGAACAGGATGCAGGGGGAGTTCTTACG 33129 Query 14287 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 ||| | || || || || || | | ||||||||| || ||||| || | || Sbjct 33128 GGCCATGGTGAACATGTCACGAACACGGGCAGGACCGACACCGACGAACATTTCGAGGAA 33069 Query 14347 ATTGGCGGCGGA-ACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGA 14405 | || |||| ||| | ||||||||| ||||| | |||||| || |||| ||||| Sbjct 33068 TTCGGAACCGGAGACAGT-GATGAAGGGTACGTTGGCTTCACCGGCAGTGGCCTTGGCGA 33010 Query 14406 GGAGGGTCTTCCCCGTCCCTGGT 14428 | ||||| || || || || ||| Sbjct 33009 GAAGGGTTTTACCGGTACCAGGT 32987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618427933386400