Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq97 199 5e-46 seq585 138 1e-27 seq491 95.1 1e-14 seq319 87.8 2e-12 >seq97 Length=72787 Score = 199 bits (220), Expect = 5e-46 Identities = 848/1324 (64%), Gaps = 42/1324 (3%) Strand=Plus/Plus Query 104532 ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTG 104591 |||| || | || ||||| || ||||| ||| ||| || ||||| || |||| | | Sbjct 69395 ATGGCCTTGTCCCGATGCTCCGTGTATTCAACAACACTGCTCGCTACGTCGATCAGGGCG 69454 Query 104592 G------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCA 104645 | ||||| || || |||| |||| || || || |||||||| || ||| Sbjct 69455 GAAACAAGCGTCCT---GGCGCTTTCGCCATCTACCTCGAACCGTGGCACGCAGACATCT 69511 Query 104646 TGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCT 104705 | ||| || | || || || | |||| ||||| | ||| ||| ||||||| Sbjct 69512 TTGAGGTCATGGATATGAAGAAGAATCGTGGTGCTGAGGAAGAGCGTGCCCGTGATCTCT 69571 Query 104706 TCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGT 104765 ||| ||||||||||| || ||||| ||||||||| | || || |||| |||| Sbjct 69572 TCTATGCTCTCTGGATCCCCGATCTTTTCATGAAGCGCGTGGAAACCGACGGCACCTGGT 69631 Query 104766 CTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAA 104824 |||| | || || || || || ||||| || ||| | ||| ||| |||| || Sbjct 69632 CTCTGATGTGCCCCCACGAGTGCCCCGGTCTTGAGGACTGCTG-GGGCGAGAAGTTCGAG 69690 Query 104825 GCCCTTTACACAAAGTACGAG--GAAGAAGGTCGGGCGACTGCGA---CGGTGCCAG-CT 104878 | || ||||| || |||||| | ||||| || | ||| | | | || || Sbjct 69691 GAGCTCTACACGAAATACGAGTCGGAGAAG------CGTTTCCGAAAGCAGATCAAGGCT 69744 Query 104879 GCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTT 104938 |||| | ||||| || ||| ||||| ||| ||||| || || ||||||||| Sbjct 69745 CGCGATCTCTGGAAGCACATCATCAGCGCTCAAGTCGAAACTGGCACCCCCTACATGCTT 69804 Query 104939 TACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCC 104998 |||||||||||||| |||| ||||| || || |||| | || |||||| | | Sbjct 69805 TACAAAGACGCCTGCAACCGTAAGAGCAACCAGCAGAACCTCGGAACGATCAAATGCAGC 69864 Query 104999 AATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTC 105058 || || || || |||||| | |||| | | | |||||| || || || || || Sbjct 69865 AACCTGTGCACCGAAATCGTCGAATACAGCGCCCCTGATGAGGTCGCCGTCTGCAATCTG 69924 Query 105059 GCATCAATCGCTCTCCCCAAGTATGT-GGATCCAGAGACAAAGACATTTGATTATGAAAA 105117 || || ||||| | | | || || ||| || || ||| |||| | || Sbjct 69925 GCGTCGATCGCGTTGAACCGCTTCGTCGGCCCCA---ACCGTGA-ATTCGATTTCAACAA 69980 Query 105118 ACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTT 105177 | | | || ||||| ||||||||||| ||| | |||| | || || | || | Sbjct 69981 GTTGAAGGCTGTCACGAAGACTGTCACCAAGAACTTGAACAAGATCATCGACATCAACTA 70040 Query 105178 TTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGT 105237 ||||||||| | ||| || || || | | | || ||||| || ||| |||| || Sbjct 70041 TTACCCCGTCCCGGAGGCTGAAAAGTCGAACAAGCGCCATCGTCCCATCGGTATCGGCGT 70100 Query 105238 TCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAA 105297 ||||| ||||| |||| ||| || || | |||| |||||| | ||| | Sbjct 70101 CCAGGGCCTCGCTGATGCCTTCCAACTCATGCGACTTCCATTCACTTCCGAAG--GCGCA 70158 Query 105298 GGAAA--TCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCA 105355 | | || || || || ||||| || || | | || ||||| ||| | Sbjct 70159 CGTCTGTTGAACAAGCAGATCTTCGAGACTATCCATTATGGTGCCCTTGAAGCGTCGGCG 70218 Query 105356 GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG 105415 || ||||| | || ||||| ||||||| ||| || ||||| | || |||||| Sbjct 70219 GAATTGGCCGGCACCCTAGGCCCATACGAAACCTATGAAGGCTCTCCGGTGTC-CAAGGG 70277 Query 105416 G-TGCTTCAATTTGATATGTGGGAAGGTGA----GACCAAGCTTCACTACGACTGGGAAG 105470 | || ||| || |||||| || |||| |||||| || | ||||||| Sbjct 70278 CATTCTGCAACACGACATGTGG-AATGTGACCCCGACCAACCTG---TGGGACTGGGCCC 70333 Query 105471 CTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGC 105530 | || ||||| ||||||| |||| ||| |||| ||| |||||| | || || |||| Sbjct 70334 CGCTTCGGGAACTCATCAAGAAGAACGGTGTTCGCAACTCGCTCCTCGTCGCCCCTATGC 70393 Query 105531 CAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGA 105590 | || ||||||||||| || || | || || ||||||| | | || |||||| || | Sbjct 70394 CGACGGCCTCCACCGCGCAGATTCTCGGAAACAATGAATCCATCGAGCCCTACCGCACCA 70453 Query 105591 ACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGG 105650 || |||| | | ||| | || || || || ||| ||||| || Sbjct 70454 ACGTCTACACTCGTGGTGTCCTTTCCGGTACTTTCCAAATCGTGAACCCCCATCTGTTGA 70513 Query 105651 ATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGG 105710 | || ||| ||| | ||||||| | | ||| | ||| | | | || | | Sbjct 70514 ACGATCTCGTCGAGCGTAATCTCTGGAACGACGATGTCAAGAACCACTTGCTCGCTGGCA 70573 Query 105711 GTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAG 105770 |||| ||| ||||||| || | || || |||| | ||| || | ||| || | Sbjct 70574 GTGGCTCCGTTCAAAACATCCCCGGCATCCCGGATGACGTCAAGGAGATCTACAAGACCG 70633 Query 105771 TTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTG 105830 | |||||||||| |||||| |||| | |||||||| |||||||| |||||||| Sbjct 70634 TCTGGGAAATCAGTCAGAAGGACATCATCCAGATGGCCGCCGATCGTGGCGCCTTCATTG 70693 Query 105831 ATCA 105834 |||| Sbjct 70694 ATCA 70697 >seq585 Length=222271 Score = 138 bits (152), Expect = 1e-27 Identities = 804/1277 (63%), Gaps = 19/1277 (1%) Strand=Plus/Minus Query 104314 GTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAG 104373 ||||| ||| || || || || || |||||||| ||||| || | || || ||||| Sbjct 92768 GTTCACTCATGCCACGCCCACACTGTTCAATGCGGGTACCCCTCGGCCTCAGATGTCGTC 92709 Query 104374 TTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGA 104433 |||||||| | ||| |||||||| | | || |||| | || || | | | Sbjct 92708 CTGCTTCCTGTTGACCATGTCAGAGGACTCCGTTGAAGGCATCTTCGACACCCTGAAGCA 92649 Query 104434 GTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGC 104493 |||||| | ||| |||| ||||| || || || || || |||| | | | || Sbjct 92648 GTGTGCTCGCATCAGCAAGTCCGCTGGTGGCATCGGCATCAACGTCCACAACATCCGTGC 92589 Query 104494 CAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCG 104553 | | | ||| | || || ||| || | || || | || ||||| || Sbjct 92588 CGCCGGAACCCGTGTCGCTGGCACTGGTGGCATCTCGCACGGCCTTGTCCCGATGCTCCG 92529 Query 104554 CGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGG---GCGTCGAAAGGGATCTAT 104610 ||| || ||| ||| || || || | || |||| || ||||| || | | Sbjct 92528 CGTCTTCAACAACACGGCTCGTTACATCAACCAAGGCGGTAAGCGTCCC---GGTGCCTT 92472 Query 104611 CGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAA 104670 || |||||||| ||||| ||||| || || | | || |||| || | || Sbjct 92471 TGCCGTCTATCTCGAGCCCTGGCATGCCGACGTTTTCGAAGTCCTCGATCTCAAGAAGAA 92412 Query 104671 CCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCT 104730 | |||| ||| || | || ||| || ||||||| ||| |||||||| || ||||| Sbjct 92411 CACTGGTGCCGATGAAGAACGTGCCCGTGACCTCTTCTACGCCCTCTGGATCCCCGATCT 92352 Query 104731 CTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACC 104790 |||||||||| | || || || | ||||| || | || || | || || Sbjct 92351 CTTCATGAAGCGCGTCGAAACCGACGGAACCTGGTCCCTGATGTGCCCCCATGAGTGTCC 92292 Query 104791 TGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGA 104850 ||||||| ||| | ||| ||||||||||| || ||||| || |||||| || Sbjct 92291 TGGTCTCGAGGATTGCTGGGGCGAGGAGTTTGAGCAGCTCTACACCAAATACGAGTCCGA 92232 Query 104851 AGGTCGGGCGACTG-CGACG-GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCT 104908 | || | || | || | || | || || | ||||| ||| || ||| Sbjct 92231 AAAGCG--CTACCGTCGTCAAGTCCTTGCCCGTGACCTTTGGAAGCACATTGTCGGCTCT 92174 Query 104909 CAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAAT 104968 ||| || || || || || |||||| | |||||||| ||||| |||| ||||| || Sbjct 92173 CAAGTTGAAACCGGCACGCCCTACATGGTCTACAAAGATGCCTGCAACCGTAAGAGCAAC 92114 Query 104969 CAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACA 105028 ||| |||| | || |||||| || ||| || || || || ||| | |||| | Sbjct 92113 CAACAGAACCTCGGAACGATCAAATGTAGCAACCTGTGCACCGAGATCGTCGAATACAGC 92054 Query 105029 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT-GGA 105087 | |||||| || || || || || || || ||||| | | | || || Sbjct 92053 GCGCCTGATGAGGTCGCCGTCTGCAATCTGGCGTCGATCGCGTTGAACCGCTTCGTCGGC 91994 Query 105088 TCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAA 105147 ||| || || ||| |||| | || | | | || ||||| || |||||||| Sbjct 91993 CCCA---ACCGTGA-ATTCGATTTCAACAAGTTGAAGGCTGTCACGAAGACCGTCACCAA 91938 Query 105148 AAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAA 105207 ||| | |||| | || || | || | |||||| ||| | ||| || || || Sbjct 91937 GAACTTGAACAAGATCATCGACATCAACTATTACCCTGTTCCGGAGGCTGAAAAGTCGAA 91878 Query 105208 TATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTG 105267 | | | || ||||| || ||| |||| || ||||| ||||| |||| ||| || Sbjct 91877 CAAGCGCCATCGTCCCATCGGTATCGGCGTCCAGGGCCTCGCTGATGCCTTCCAACTCAT 91818 Query 105268 TCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCAT 105327 || | | || | |||||| | |||| | | || || || ||||||||||| Sbjct 91817 GCGACTGCCGTTCGCTTCCGAAGGCGCGAGGCGTCTGAACAAGCAGATCTTTGAGACCAT 91758 Query 105328 GTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAAC 105387 || ||| || ||||| ||| | || |||| | || ||||| | || || || Sbjct 91757 CTACTACGGTGCCCTTGAAGCGTCGGCGGAACTGGCCGGTATTCATGGTGCCTACGAGAC 91698 Query 105388 CTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGAC 105447 || ||| || || || | || | || | || ||| || |||| ||||||| | || Sbjct 91697 CTATGAAGGGTCCCCGGTGTCGAAGGGCATTCTGCAACACGACATGT-GGAAGGTCA-AC 91640 Query 105448 CAAGCTTCACTA--CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGT 105505 | || ||| ||||||| | || | ||| ||||||| |||| ||| | || Sbjct 91639 CCGACTAACCTATGGGACTGGGCCCCGCTTCGGAAACTCATCAAGAAGAACGGTGTCCGC 91580 Query 105506 AACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 105565 ||| |||||| | || || ||||| || || |||||||| || || | || || || Sbjct 91579 AACTCGCTCCTCGTCGCCCCCATGCCGACGGCTTCCACCGCGCAGATTCTCGGCAACAAC 91520 Query 105566 GAATGCTTTGAACCCTA 105582 |||| | | || ||||| Sbjct 91519 GAATCCATCGAGCCCTA 91503 >seq491 Length=111361 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 169348 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGAC 169407 ||| |||||||| ||||||||||| ||| |||| ||||| | ||| || || || ||||| Sbjct 65715 CTTACCACGAAGCGGGAAGACACCATAGCGATCGCGACCGATGACAGACAGGCCTGCGAC 65656 Query 169408 TGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACA 169452 ||||| ||||| || ||||| || ||||| | ||| ||||| || Sbjct 65655 GGCGAGGGTCTTGGCGGAGTCTCCTTCGGTCAGGATTAGCGTGCA 65611 >seq319 Length=516904 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| | || || || |||| || || || ||||| ||||||||| || ||| Sbjct 271994 TCCTTCGGCGAACGGGTCATCGCTTTCGCCGCCGTCGAGGGCATCTTCTTCAGCGGGTCC 271935 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 ||| || || | ||||||||| | || ||||||||||| ||||| | |||||| Sbjct 271934 TTCGCAGCCATCTTCTGGCTCAAGGAACGCGGTCTCATGCCCGGTCTGACCCACTCCAAT 271875 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| ||||| ||||| ||||| || || | || ||||| Sbjct 271874 GAGCTCATCTCCCGTGATGAGGGCCTTCATCGCGACTTTGC 271834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583253946685600