Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq585 217 2e-51 seq97 208 8e-49 >seq585 Length=222271 Score = 217 bits (240), Expect = 2e-51 Identities = 469/693 (68%), Gaps = 9/693 (1%) Strand=Plus/Minus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || || || |||||||| || |||||||| || ||||| || |||||||||||| | Sbjct 92767 TTCACTCATGCCACGCCCACACTGTTCAATGCGGGTACCCCTCGGCCTCAGATGTCGTCC 92708 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 ||||||||| || | ||| || ||||| | || ||||||| ||| || || ||| || Sbjct 92707 TGCTTCCTGTTGACCATGTCAGAGGACTCCGTTGAAGGCATCTTCGACACCCTGAAGCAG 92648 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCG 53452 ||||| | |||| ||||| | ||||| ||||| ||| || | ||| ||||||| Sbjct 92647 TGTGCTCGCATCAGCAAGTCCGCTGGTGGCATCGGCATCAACGTCCACAACATCCGTGCC 92588 Query 53453 AACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGC 53512 ||| || | || || || ||| || | | || | || || ||||||||| Sbjct 92587 GCCGGAACCCGTGTCGCTGGCACTGGTGGCATCTCGCACGGCCTTGTCCCGATGCTCCGC 92528 Query 53513 GTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTC 53572 ||||||||||||||||| || ||| ||||||| || ||| ||||| || | || Sbjct 92527 GTCTTCAACAACACGGCTCGTTACATCAACCAAGGCGGT---AAGCGTCCCGGTGCCTTT 92471 Query 53573 GCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAAT 53632 ||| |||| |||||||| ||||| |||||| || | || | ||||| || ||| Sbjct 92470 GCCGTCTATCTCGAGCCCTGGCATGCCGACGTTTTCGAAGTCCTCGATCTCAAGAAGAAC 92411 Query 53633 CAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCT 53691 |||| ||| || || ||||||||| || ||| || || ||||| || || || Sbjct 92410 ACTGGTGCCGATGAAGAACGTGCCCGTGACCTCTTCTAC-GCCCTCTGGATCCCCGATCT 92352 Query 53692 CTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCC 53751 ||||||| | || || | |||| |||| |||||||||||| | ||||| || Sbjct 92351 CTTCATGAAGCGCGTCGAAACCGACGGAACCTGGTCCCTGATGTGCCCCCATGAGTGTCC 92292 Query 53752 CGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTC- 53810 || ||| ||| | || || ||||||||| | || | || | |||| ||| | Sbjct 92291 TGGTCTCGAGGATTGCTGGGGCGAGGAGTTTGAGCAGCTCTACACCAAATACG-AGTCCG 92233 Query 53811 AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCA-ATCCTCAAGAGC 53869 | |||||| | ||| || ||||| | | ||| ||| || || Sbjct 92232 AAAAGCGCTACCGTCGTCAAGTCCTTGCCCGTGACCT-TTGGAAGCACATTGTCGGCTCT 92174 Query 53870 CAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAAC 53929 || || || || || ||||| |||||| |||||| ||| | |||| ||||||||| Sbjct 92173 CAAGTTGAAACCGGCACGCCCTACATGGTCTACAAAGATGCCTGCAACCGTAAGAGCAAC 92114 Query 53930 CAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 || ||||| |||| ||||||| |||||| Sbjct 92113 CAACAGAACCTCGGAACGATCAAATGTAGCAAC 92081 >seq97 Length=72787 Score = 208 bits (230), Expect = 8e-49 Identities = 469/694 (68%), Gaps = 8/694 (1%) Strand=Plus/Plus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || || || |||||||| || |||||||| || ||||| || |||||||||||| | Sbjct 69178 TTCACCCATGCCACGCCCACTCTGTTCAATGCGGGTACCCCTCGGCCTCAGATGTCGTCC 69237 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 |||||| || | | ||| ||||||| ||||| ||||| | ||| || | ||| | Sbjct 69238 TGCTTCTTGCTAACTATGTCGGATGACAGCATCGATGGCATTTTCGACACATTGAAGCAA 69297 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCG-AACGTCCGTGC 53451 || || | ||||| |||| | || || || || || | || || ||| ||||||| Sbjct 69298 TGCGCAAAGATCTCAAAGTCAGCCGGCGGCATTGGGCTCAA-TGTTCACAACATCCGTGC 69356 Query 53452 GAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCG 53511 | || | | || || || ||| ||| || |||| | || || |||||||| Sbjct 69357 CACTGGATCCCACATTGCTGGTACCGGCGGAGTCTCCAATGGCCTTGTCCCGATGCTCCG 69416 Query 53512 CGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTT 53571 || ||||||||||| || || |||||| | ||||| || ||||| || | || Sbjct 69417 TGTATTCAACAACACTGCTCGCTACGTCGATCAGGGCGGAAACAAGCGTCCTGGCGCTTT 69476 Query 53572 CGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAA 53631 ||||||||||||||| ||||||||||| ||||| | ||| | | || || ||| Sbjct 69477 CGCCATCTACCTCGAACCGTGGCACGCAGACATCTTTGAGGTCATGGATATGAAGAAGAA 69536 Query 53632 TCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCT 53691 || |||| || || ||| |||||| || || ||||| ||||| || || || Sbjct 69537 TCGTGGTGCTGAGGAAGAGCGTGCCCGTGATCTCTTCTATGCTCTCTGGATCCCCGATCT 69596 Query 53692 CTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCC 53751 |||||| | ||||| | |||| |||| ||||||||||| |||||||||| Sbjct 69597 TTTCATGAAGCGCGTGGAAACCGACGGCACCTGGTCTCTGATGTGCCCCCACGAGTGCCC 69656 Query 53752 CGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGT-TC 53810 ||| || ||| || || ||| |||| | ||| | || || |||| ||| Sbjct 69657 CGGTCTTGAGGACTGCTGGGGCGAGAAGTTCGAGGAGCTCTACACGAAATACG-AGTCGG 69715 Query 53811 AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCA-ATCCTCAAGAGC 53869 || || | | ||| || ||||||| || || | | ||| ||| ||| || || || Sbjct 69716 AGAAGCGTTTCCGAAAGCAGATCAAGGCTCGCGATCTCT-GGAAGCACATCATC-AGCGC 69773 Query 53870 -CAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAA 53928 || || || || || || || |||||| ||||| || | |||| |||||||| Sbjct 69774 TCAAGTCGAAACTGGCACCCCCTACATGCTTTACAAAGACGCCTGCAACCGTAAGAGCAA 69833 Query 53929 CCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||| ||||| |||| ||||||| |||||| Sbjct 69834 CCAGCAGAACCTCGGAACGATCAAATGCAGCAAC 69867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209570212000