Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq806 138 1e-27 seq394 123 2e-23 >seq806 Length=689343 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || ||||| ||| | || || |||||||| || || Sbjct 392407 CATGCAGATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTTGAAGTTGAGGGTTC 392348 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| ||||| || ||||||||||| ||||| || || || ||||| Sbjct 392347 AGACACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCA 392288 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || | ||||| | ||| | ||||| ||||| Sbjct 392287 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 392228 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||| || ||| | || ||||| | | ||||| || ||||| Sbjct 392227 CATTCAGAAGGAATCTACCCTCCACTTGGTCCTCAGATTGCGCGGCGGCAT 392177 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || ||||| ||| |||| || || ||||| ||| Sbjct 392635 CATGCAGATCTTTGTCAAGACCCTTACCGGAAAGACTATCACCCTCGAAGTTGAAGGCAG 392576 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | ||||| || |||||||| || |||||||| || || || || Sbjct 392575 CGACACCATCGAAAACGTCAAGGCTAAGATTCAAGATAAGGAAGGCATCCCTCCGGACCA 392516 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | ||||||||| || | || || | || | ||||||||| Sbjct 392515 GCAACGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACATTGAGCGATTACAA 392456 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | || |||||| | || | || |||||||| Sbjct 392455 CATCCAGAAGGAATCTACCCTCCACTTGGTTCTCCGACTTCGCGGTGGCAT 392405 >seq394 Length=505719 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| |||||| |||| ||| | ||||| ||| || Sbjct 9431 CATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACTTTGGAAGTCGAAGGCTC 9372 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| ||||| || || |||||||| |||||||| || || || || Sbjct 9371 CGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 9312 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | ||||||||| || | ||||| || ||| | ||| ||||| Sbjct 9311 GCAACGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGCACCCTCAGCGACTACAA 9252 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | ||| | || | ||| | || || || || Sbjct 9251 CATCCAGAAGGAGTCGACCCTCCATCTCGTCCTCCGTCTTCGTGGCGGTAT 9201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434913289708800