Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq806 111 1e-19 >seq806 Length=689343 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || |||||||| || |||||||| || Sbjct 391950 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACGATCACCCTGGAAGTTGAAGGCAGC 391891 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || | | ||||| ||||| | || |||||||| Sbjct 391890 GACACCATCGAGAATGTGAAAGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGATCA 391832 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || || || || | ||||| || | || ||||| Sbjct 391831 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACATTGAGTGACTACAA 391772 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 391771 CATCCAGAAGGAGTCTAC 391754 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || ||||| || ||||| ||||||||||| || Sbjct 392634 ATGCAGATCTTTGTCAAGACCCTTACCGGAAAGACTATCACCCTCGAAGTTGAAGGCAGC 392575 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || ||| || || ||||| | || || || || Sbjct 392574 GACACCATCGAAAACGTCAAGGCTAAGATTCAAGATAAGGAAGGCATCCCTCCGGACCAG 392515 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || |||||||| || || || || | ||||| || ||||||||||| Sbjct 392514 CAACGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACATTGAGCGATTACAAC 392455 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || || || | || || ||| Sbjct 392454 ATCCAGAAGGAATCTACCCTCCACTTGGTT 392425 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| | || || || || ||||| ||||||||||| | Sbjct 392178 ATGCAGATCTTCGTGAAAACTTTGACTGGCAAGACTATCACCCTCGAAGTTGAAGGATCA 392119 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||| ||| || || ||||| | || ||||| ||| Sbjct 392118 GACACCATCGAGAACGTCAAGGCAAAGATTCAAGATAAGGAAGGCATTCCCCCAGACCAA 392059 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || ||||| || || || ||||| | || || | ||| |||||| Sbjct 392058 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGTACCCTCTCCGACTACAAC 391999 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || || |||||| | ||| Sbjct 391998 ATCCAGAAGGAATCCACACTCCAT 391975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005727677520