Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq806 161 2e-34 seq394 158 3e-33 seq793 98.7 2e-15 >seq806 Length=689343 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || ||||| |||||||| || |||| ||||| |||| | || | |||||| Sbjct 391967 AGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCT 392026 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | || |||||||| || ||||| |||||||| ||| Sbjct 392027 TCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCTTCCTTATCT 392086 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| ||| || |||||||||||||| ||| || || | ||||| ||| Sbjct 392087 TGAATCTTTGCCTTGACGTTCTCGATGGTGTCTGATCCTTCAACTTCGAGGGTGATAGTC 392146 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||| | ||| | ||||| Sbjct 392147 TTGCCAGTCAAAGTTTTCACGAAGATCTGCAT 392178 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || || | |||||| || ||||| || |||| ||||||||| ||| || Sbjct 392414 CGAAGTCGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGCTCAATGTG 392473 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || ||||||||||| ||||| ||||| || || || ||| Sbjct 392474 CGGCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGAGGGATGCCT 392533 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||| ||||| ||| || |||||||||||| | ||| || || | Sbjct 392534 TCCTTATCTTGAATCTTAGCCTTGACGTTTTCGATGGTGTCGCTGCCTTCAACTTCGAGG 392593 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 392594 GTGATAGTCTTTCCGGT 392610 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || || ||||| |||||||| || |||| ||||| |||| | ||| Sbjct 392642 CGAAGACGGAGAACGAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTA 392701 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| || |||||||| || || || ||||| || ||||| ||| Sbjct 392702 CGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCT 392761 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| ||| || || ||||| | ||| || || | Sbjct 392762 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATAGTGTCGCTGCCTTCAACCTCGAGG 392821 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 392822 GTGATGGTCTTGCCAGT 392838 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| ||||| | |||||| || ||||| || || | ||||| |||| | || | || Sbjct 392191 TCTGAGGACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCC 392250 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| |||||||| || |||||||| || || || || || || |||||||||||||| Sbjct 392251 ATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATACCTTCCTT 392310 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| ||||| ||| || || ||||||||||| || || || | ||||| Sbjct 392311 GTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAACCCTCAACTTCAAGGGTGAT 392370 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | || || | ||| | ||||| Sbjct 392371 GGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 392406 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| ||||| | ||| || || || || || |||| ||||| || ||| || Sbjct 391729 ACGGAGTCGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCACTCAATGT 391788 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || || ||||| || || || || || || ||||| || Sbjct 391789 GCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCC 391848 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| |||||| ||||||||||| | ||| || || | Sbjct 391849 TTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGCCTTCAACTTCCAG 391908 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||| || | || || | ||| | ||||| Sbjct 391909 GGTGATCGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 391950 Score = 107 bits (118), Expect = 5e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||||||||| || || || || || || || || |||||||||||||||||||| Sbjct 393005 CTTACCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTT 393064 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||| |||||||||||| ||| || || | ||||| |||||||| || Sbjct 393065 GGCCTTGACATTTTCAATGGTGTCTGAGCCTTCAACCTCAAGGGTGATGGTCTTGCCGGT 393124 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | ||| || | ||| | ||||| Sbjct 393125 AAGAGTCTTGACGAAGATCTGCAT 393148 >seq394 Length=505719 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 || ||||| | |||||| || ||||| ||||||| ||||| |||| |||||| | || Sbjct 8760 CTGAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTACGGCCG 8819 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 ||||| |||||||| || ||||| || || ||||| ||||| || || |||||||||||| Sbjct 8820 TCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTG 8879 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 ||||||||||| ||| || |||||||||||| || || || || | ||||| Sbjct 8880 TCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGAACCCTCAACTTCAAGGGTGATA 8939 Query 225679 GTCTTGCCCGTCAAAGTTTT 225698 |||||||| ||||| || || Sbjct 8940 GTCTTGCCAGTCAAGGTCTT 8959 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| || ||||| || || || || |||| ||||| ||| | || Sbjct 9209 ACGAAGACGGAGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGT 9268 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| || |||||||| || ||||| ||||| || ||||| || Sbjct 9269 GCGACCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATGCC 9328 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| ||| || ||||||||||| ||| ||| || || || Sbjct 9329 TTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGCCTTCGACTTCCAA 9388 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| ||||| || || | ||| | ||||| Sbjct 9389 AGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 9430 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || || || ||||| ||||||| ||||| ||| | || | |||||| Sbjct 8535 AGGACGAGATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCT 8594 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||||||||| ||||| ||||| || ||||| |||||||||||| Sbjct 8595 TCAAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 8654 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||| |||||||| | ||| || || | || |||||| Sbjct 8655 TGGATCTTGGCCTTGACGTTTTCAATGGTGTCGCTGCCTTCGACTTCGAGGGTAATCGTC 8714 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | |||||| Sbjct 8715 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 8746 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || |||||||| || |||| ||||| |||| | || | ||||| Sbjct 9959 AGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCC 10018 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| | || || || || || ||||| |||||||| || Sbjct 10019 TCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCCGGGGGAATGCCTTCCTTATCC 10078 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| |||||||||||| ||| || || || | ||||| ||| Sbjct 10079 TGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGCCCTCAACCTCGAGGGTGATGGTC 10138 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||||| || || | ||| | |||||| Sbjct 10139 TTTCCCGTCAGGGTCTTGACGAAGATTTGCAT 10170 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| || ||||| || |||| ||||| |||| ||| || | |||||| Sbjct 8991 AGGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCT 9050 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| ||||||||||| | || || ||||| || |||||||||||||| || Sbjct 9051 TCCAACTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCTTCCTTATCC 9110 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| | ||| || || | ||||| ||| Sbjct 9111 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGCCTTCGACCTCAAGGGTGATGGTC 9170 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 9171 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 9202 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | |||||| |||||||| || |||| ||||| |||| |||||| | || Sbjct 9443 TCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCC 9502 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||| || |||||||| || |||||||| || ||||| || || || || ||||||||||| Sbjct 9503 ATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGGATACCTTCCTT 9562 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 || |||||||| ||| || || || ||||| | ||| || || | ||||| Sbjct 9563 ATCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCGCTGCCTTCGACTTCGAGGGTGAT 9622 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||| || | || || | ||| | ||||| Sbjct 9623 CGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 9658 Score = 111 bits (122), Expect = 4e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || ||||| ||||| ||||| ||||| || ||||| |||||||||||||||||||| Sbjct 9799 CTTACCGGCGAAAATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTT 9858 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || |||||||||||| ||| ||| || || || ||||| |||||||| || Sbjct 9859 GGCCTTGACGTTTTCGATGGTGTCAGAGCCTTCGACTTCCAAAGTGATGGTCTTGCCGGT 9918 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | ||||| Sbjct 9919 GAGGGTCTTGACGAAGATCTGCAT 9942 >seq793 Length=17056 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||||||||| | ||||| || || || ||||| |||||||| || |||||||| Sbjct 5317 CTTACCAGCGAAGATCAAACGTTGCTGATCCGGGGGAATGCCTTCCTTATCCTGGATCTT 5376 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| |||||||||||| |||| || || || | ||||| |||||||| || Sbjct 5377 GGCCTTGACATTTTCGATGGTGTCAGAGGCCTCAACCTCAAGGGTGATGGTCTTGCCGGT 5436 Query 225690 CAAAGTTTTTATGAACACTTGCATTTT 225716 | || || | ||| | ||||| || Sbjct 5437 GAGGGTCTTGACGAAGATCTGCATCTT 5463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192516837452360