Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq97 156 6e-33 seq585 129 8e-25 >seq97 Length=72787 Score = 156 bits (172), Expect = 6e-33 Identities = 517/798 (65%), Gaps = 12/798 (2%) Strand=Plus/Minus Query 77672 GTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTAT 77731 |||||| || || || || ||||| || || || ||||||| || | | |||| | Sbjct 69942 GTTCAACGCGATCGACGCCAGATTGCAGACGGCGACCTCATCAGGGGCGCTGTATTCGAC 69883 Query 77732 TATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTT 77791 || ||||| || || || || |||||||| || || || || || ||||||||||| Sbjct 69882 GATTTCGGTGCACAGGTTGCTGCATTTGATCGTTCCGAGGTTCTGCTGGTTGCTCTTACG 69823 Query 77792 ATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||||| | ||| || ||||| || | || || || ||||| | || | ||| || Sbjct 69822 GTTGCAGGCGTCTTTGTAAAGCATGTAGGGGGTGCCAGTTTCGACTTGAGCGCTGATGAT 69763 Query 77852 AGATTTCCAGACGACTCTAGCTTTTATCATAGATTT--GTATCGCCTCTCTCTTTCATAT 77909 ||||||| | | ||| || ||| | ||| | | ||| |||| || ||| Sbjct 69762 GTGCTTCCAGAGATCGCGAGCCTTGATC--TGCTTTCGGAAACGCTTCTCCGACTCGTAT 69705 Query 77910 TGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTT 77969 | || || ||| || || | || ||||| || || | || ||||| || | Sbjct 69704 TTCGTGTAGAGCTCCTCGAACTTCTCGCCCCAGCAGTCCTCAAGACCGGGGCACTCGTGG 69645 Query 77970 GGGCACATCAATGACCAGTCACCATC---TTCCTTAACTCGTTTCATAAAGAGATCAGGT 78026 |||||||||| |||||| || || |||| || || ||||| || ||||| || Sbjct 69644 GGGCACATCAGAGACCAGGTGCCGTCGGTTTCC---ACGCGCTTCATGAAAAGATCGGGG 69588 Query 78027 ATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTA 78086 ||||| |||||| || ||||| |||| | | ||| ||| || |||||| || Sbjct 69587 ATCCAGAGAGCATAGAAGAGATCACGGGCACGCTCTTCCTCAGCACCACGATTCTTCTTC 69528 Query 78087 AGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCA 78146 | ||| | | ||| | || || | ||||| ||||| || || || || | | | ||| Sbjct 69527 ATATCCATGACCTCAAAGATGTCTGCGTGCCACGGTTCGAGGTAGATGGCGAAAGCGCCA 69468 Query 78147 GGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATT 78206 || || || || || |||||||| | || | || ||||| || | || | | ||| Sbjct 69467 GGACGCTTGTTTCCGCCCTGATCGACGTAGCGAGCAGTGTTGTTGAATACACGGAGCATC 69408 Query 78207 GGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATA 78266 || | || || || || ||| || |||| ||| | |||| | || || || Sbjct 69407 GGGACAAGGCCATTGGAGACTCCGCCGGTACCAGCAATGTGGGATCCAGTGGCACGGATG 69348 Query 78267 TTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAAT 78326 || || | ||| || || || || ||| || || ||||| | |||||| Sbjct 69347 TTGTGAACATTGAGCCCAATGCCGCCGGCTGACTTTGAGATCTTTGCGCATTGCTTCAAT 69288 Query 78327 GTATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACAT 78385 || ||| | || || || || ||||||||| ||| |||| ||| || ||| ||||| Sbjct 69287 GTGTCGAAAATGCCATCGATGCTGTCATCCGACATAGTTAGCAAG-AAGCAGGACGACAT 69229 Query 78386 TTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTC 78445 ||| | || || || ||||| || | || || | ||||| || ||||| || Sbjct 69228 CTGAGGCCGAGGGGTACCCGCATTGAACAGAGTGGGCGTGGCATGGGTGAACCAGCGCTC 69169 Query 78446 AGAAAGTAGATTGTATGT 78463 || | |||||||| || Sbjct 69168 GGACATGAGATTGTAGGT 69151 >seq585 Length=222271 Score = 129 bits (142), Expect = 8e-25 Identities = 309/465 (66%), Gaps = 12/465 (3%) Strand=Plus/Plus Query 77672 GTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAG---CGTTGGCATATTG 77728 |||||| || || || || ||||| || || || ||||||| || || || |||| Sbjct 92006 GTTCAACGCGATCGACGCCAGATTGCAGACGGCGACCTCATCAGGCGCGCTG---TATTC 92062 Query 77729 TATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTT 77788 | |||||||| || || || ||||||||||| || || || || |||||||||||||| Sbjct 92063 GACGATCTCGGTGCACAGGTTGCTACATTTGATCGTTCCGAGGTTCTGTTGGTTGCTCTT 92122 Query 77789 TTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGAT 77848 ||||| | || || || | || | || || |||||||||| || || ||| Sbjct 92123 ACGGTTGCAGGCATCTTTGTAGACCATGTAGGGCGTGCCGGTTTCAACTTGAGAGCCGAC 92182 Query 77849 AATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCTTTCATA 77908 ||| ||||| | | | | || | | ||| ||| | || || || Sbjct 92183 AATGTGCTTCCAAAGGTCACGGGCAAGGACTTGACGACGGTAGCGCTTTTCGGACTCGTA 92242 Query 77909 TTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATT 77968 || || || ||| | ||||| || || ||||| ||| || | ||||| || |||| Sbjct 92243 TTTGGTGTAGAGCTGCTCAAACTCCTCGCCCCAGCAATCCTCGAGACCAGGACACTCATG 92302 Query 77969 TGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTAT 78028 |||||||||| |||||| || || | || || ||||| |||||||| || || Sbjct 92303 GGGGCACATCAGGGACCAGGTTCCGTCGGTTTCGACGCGCTTCATGAAGAGATCGGGGAT 92362 Query 78029 CCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCAT---TTCCTGTATTCTTTTT 78085 ||| || || || || || |||| | ||||||||| || || ||||| || Sbjct 92363 CCAGAGGGCGTAGAAGAGGTCACGGG---CACGTTCTTCATCGGCACCAGTGTTCTTCTT 92419 Query 78086 AAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 78130 |||||||| | || | || || | |||||| || || ||||| Sbjct 92420 GAGATCGAGGACTTCGAAAACGTCGGCATGCCAGGGCTCGAGATA 92464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694660637641600