Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq806 141 2e-28 seq394 136 9e-27 >seq806 Length=689343 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| ||||| || || || || || ||||||||||| |||| | || | Sbjct 391960 GAGACGGAGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACG 392019 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| ||||||||||| | | ||| ||||| | | || ||| Sbjct 392020 GCCATCTTCAAGCTGCTTT--CCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCT 392077 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| ||| ||||| |||| | | ||||||| | || ||||| || Sbjct 392078 TCCTTATCTTGAATCTTTGCCTTGACGTTCTCGATGGTGTCTGATCCTTCAACTTCGAGG 392137 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| || | ||| |||||||||| |||||| Sbjct 392138 GTGATAGTCTTGCCAGTCAAAGTTTTCACGAAGATCTGCAT 392178 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||||||||| | || || ||||| || || || |||||||| |||| | || | || Sbjct 392191 TCTGAGGACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCC 392250 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| || || ||||||||||| || | |||||| || | | || |||||||| Sbjct 392251 ATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATACCTTCCTT 392310 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||||||| || ||||| |||| | | ||||||||| ||| |||||||| || || Sbjct 392311 GTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAACCCTCAACTTCAAGGGTGAT 392370 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| ||||||| |||||| Sbjct 392371 GGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 392406 Score = 122 bits (134), Expect = 2e-22 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| || || || || || ||||||||||| |||| | ||| | ||||| Sbjct 392650 GAGAACGAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATC 392709 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||| || ||||| ||||||||||| || | ||||||||||| | || |||||||| Sbjct 392710 TTCAAGCTGCTTT--CCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTG 392767 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || |||||| |||| | |||| | || || || || || || Sbjct 392768 TCCTGGATCTTGGCCTTGACATTCTCAATAGTGTCGCTGCCTTCAACCTCGAGGGTGATG 392827 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| |||||||| |||| |||||| Sbjct 392828 GTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 392862 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| || | || || ||||| || || ||||||||||||||| || || | Sbjct 392417 AGTCGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGCTCAATGTGCGG 392476 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || || |||||||||||||| | |||||||||| | ||| |||||| Sbjct 392477 CCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGAGGGATGCCTTCC 392536 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| || ||||| | || | | |||| | || ||||| || || Sbjct 392537 TTATCTTGAATCTTAGCCTTGACGTTTTCGATGGTGTCGCTGCCTTCAACTTCGAGGGTG 392596 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || || ||||| || |||| |||||| Sbjct 392597 ATAGTCTTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 392634 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||| | ||||| |||||||| || ||||||||||| || || || | Sbjct 391732 GAGTCGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCACTCAATGTGCG 391791 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || ||||| ||||| || | |||||| || | | || ||||| Sbjct 391792 GCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTC 391851 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||| ||| |||| | | |||| | || ||||| || || Sbjct 391852 CTTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGCCTTCAACTTCCAGGGT 391911 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || ||||| ||||||| |||||| Sbjct 391912 GATCGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 391950 >seq394 Length=505719 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 |||||||| | || || ||||| || |||||||||||||| |||| ||||| | || Sbjct 8760 CTGAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTACGGCCG 8819 Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||||| || || |||||||| || || | |||||||| | | ||| |||||||| Sbjct 8820 TCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTG 8879 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || || ||||| | || | | |||| |||| ||| |||||||| || ||| Sbjct 8880 TCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGAACCCTCAACTTCAAGGGTGATA 8939 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | ||||| || |||| |||||| Sbjct 8940 GTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 8974 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| |||||||| ||||| || |||||||||||||| ||| | || | |||||| Sbjct 8535 AGGACGAGATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCT 8594 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || |||||||||||||| | |||||||| | | || |||||||| ||| Sbjct 8595 TCAAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 8654 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | | |||| | || ||||| || ||||| || Sbjct 8655 TGGATCTTGGCCTTGACGTTTTCAATGGTGTCGCTGCCTTCGACTTCGAGGGTAATCGTC 8714 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||| ||||||| ||||| Sbjct 8715 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 8746 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| || || ||||| || ||||||||||| ||| | || | ||||| Sbjct 9218 GAGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATC 9277 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || ||||||||||| || | |||||||| | | || |||||||| || Sbjct 9278 TTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTC 9337 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || ||||| |||| | | |||| || | || ||||| | ||| ||||| Sbjct 9338 TTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGCCTTCGACTTCCAAAGTGATAGT 9397 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | ||||| ||||||| |||||| Sbjct 9398 CTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 9430 Score = 104 bits (114), Expect = 5e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | || || || || || || ||||||||||| |||| || || | ||||| Sbjct 8990 GAGGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATC 9049 Query 151952 TTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||| | ||||| || |||||||| | | ||||||||| | | || |||||||| Sbjct 9050 TTCCAACTGCTTT--CCAGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCTTCCTTA 9107 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || ||||| |||| | | |||| | || || ||||| || || Sbjct 9108 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGCCTTCGACCTCAAGGGTGATG 9167 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| ||||| ||||||| |||||| Sbjct 9168 GTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 9202 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || ||||||||||| |||| ||||| | ||||| || | Sbjct 9452 CAAG-TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGA 9510 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | ||||| || | | ||| |||||||| || || | Sbjct 9511 GCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGGATACCTTCCTTATCCTGGA 9570 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| |||| | |||| | || ||||| || || || || |||| Sbjct 9571 TCTTGGCCTTGACGTTCTCAATAGTGTCGCTGCCTTCGACTTCGAGGGTGATCGTCTTGC 9630 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| ||||||| |||||| Sbjct 9631 CGGTGAGGGTCTTGACGAAGATCTGCAT 9658 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | ||||| || || || || ||||||||||| |||| | || | Sbjct 9952 GAGACGGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACG 10011 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || |||||||| | | |||||| |||| | || ||||| Sbjct 10012 GCCATCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCCGGGGGAATGCCTTC 10071 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || |||||| | || | | |||| || | ||| || || || || Sbjct 10072 CTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGCCCTCAACCTCGAGGGT 10131 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || ||||| ||||||| ||||| Sbjct 10132 GATGGTCTTTCCCGTCAGGGTCTTGACGAAGATTTGCAT 10170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153806903670740