Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq394 152 4e-32 seq806 134 1e-26 seq793 93.3 3e-14 >seq394 Length=505719 Score = 152 bits (168), Expect = 4e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| ||||| ||||||||||| |||| ||| || | || || Sbjct 9962 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCG 10021 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || |||||||||||||||||||| | || | |||||||| ||| Sbjct 10022 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCCGGGGGAATGCCTTCCTTATCCTGG 10081 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | || | |||||||||| | || ||||| | || || |||||| Sbjct 10082 ATCTTGGCCTTGACATTTTCGATGGTGTCGGAGCCCTCAACCTCGAGGGTGATGGTCTTT 10141 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 ||||| |||||||| ||||||||||||||||| Sbjct 10142 CCCGTCAGGGTCTTGACGAAGATTTGCATGAT 10173 Score = 143 bits (158), Expect = 2e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || ||||||||||| ||| || ||| ||||| ||||||||||| || Sbjct 9428 CATGCCACCGCGCAATCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 9487 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | ||| | || || |||||||| ||||| ||||| | ||| |||||||||| Sbjct 9488 GGACAAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGG 9547 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||||||| ||| ||||| || | | |||| | || |||||| | || Sbjct 9548 GGGGATACCTTCCTTATCCTGGATCTT-GGCCTTGACGTTCTCAATAGTGTCGCTGCCTT 9606 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | || |||||||| || ||||||||||| |||||||| |||||| Sbjct 9607 CGACTTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 9659 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| || ||||||||||||||||| ||| ||| ||| | || || Sbjct 8538 ACGAGATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCTTCA 8597 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | ||| ||||| |||| || | |||||||| || Sbjct 8598 AGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 8657 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | || | ||||||||| | ||| || || | ||||||||||| Sbjct 8658 ATCTTGGCCTTGACGTTTTCAATGGTGTCGCTGCCTTCGACTTCGAGGGTAATCGTCTTG 8717 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| |||||||||||||| Sbjct 8718 CCGGTGAGGGTCTTGACGAAGATTTGCAT 8746 Score = 123 bits (136), Expect = 2e-23 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| ||| || || ||||| ||||||||||| |||| | || | || | || || Sbjct 8994 ACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGT-ACGGCCATCTTC 9052 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || || |||||||| |||||||| |||| || | ||||||||| ||| Sbjct 9053 CAACTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTG 9112 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| || | | |||| | ||||||||| | ||| ||||| | || || |||| Sbjct 9113 GATCTT-GGCCTTGACGTTCTCGATGGTGTCGCTGCCTTCGACCTCAAGGGTGATGGTCT 9171 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||||||||| |||||||| ||||| Sbjct 9172 TGCCAGTGAGGGTCTTGACGAAGATCTGCAT 9202 Score = 113 bits (124), Expect = 3e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| ||| ||| ||| | || || |||||||| ||||| || Sbjct 9239 CTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAA 9298 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||| | ||| ||||| |||| || | |||||||| || ||||| || | | || Sbjct 9299 GATGAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTT-GGCCTTGACGT 9357 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | |||||||||| | ||| || |||| || || ||||| || || | |||||| | Sbjct 9358 TCTCGATGGTGTCGGAGCCTTCGACTTCCAAAGTGATAGTCTTGCCAGTCAAGGTCTTGA 9417 Query 44325 CGAAGATTTGCATG 44338 ||||||| |||||| Sbjct 9418 CGAAGATCTGCATG 9431 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || ||||||||||||||||| |||| | || |||| || Sbjct 8766 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTCTTCG 8825 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || || | ||| ||||| |||| || | ||||||||| || Sbjct 8826 AGCTGCTTGCCGGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGG 8885 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | || | |||||||||| || || || | || || ||||| Sbjct 8886 ATCTTGGCCTTGACGTTTTCGATGGTGTCGGAACCCTCAACTTCAAGGGTGATAGTCTTG 8945 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | |||||| || ||||| |||||| Sbjct 8946 CCAGTCAAGGTCTTGACAAAGATCTGCATG 8975 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| ||||| || || | ||| ||||| |||| || | |||||||| || ||||| Sbjct 9799 CTTACCGGCGAAAATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTT 9858 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||| | || | |||||||| | | ||| || |||| || || ||||| || || Sbjct 9859 GGCCTTGACGTTTTCGATGGTGTCAGAGCCTTCGACTTCCAAAGTGATGGTCTTGCCGGT 9918 Query 44314 GAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| |||||||| |||||| Sbjct 9919 GAGGGTCTTGACGAAGATCTGCATG 9943 >seq806 Length=689343 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || |||||| ||||||||||| || | | ||| | || || Sbjct 391742 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCACTCAATGTGCGGCCATCCTCG 391801 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | |||||||||||||| || | |||||||| ||| Sbjct 391802 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 391861 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | ||| | ||||||||| | ||| || |||| || |||||||| Sbjct 391862 ATCTT-GGCTTTCACATTCTCGATGGTGTCGCTGCCTTCAACTTCCAGGGTGATCGTCTT 391920 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || |||||||| |||||||| |||||| Sbjct 391921 GCCAGTAAGGGTCTTGACGAAGATCTGCATG 391951 Score = 120 bits (132), Expect = 2e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || ||| | |||| ||| || || ||||| || |||||||| || Sbjct 392176 CATGCCGCCGCGCAATCTGAGGACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTC 392235 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || || |||||||| ||||| ||||| | |||||||||||||| Sbjct 392236 GGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGG 392295 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||||||| || ||||| || | | |||| | |||||||| | | Sbjct 392296 GGGAATACCTTCCTTGTCTTGAATCTT-AGCCTTGACGTTCTCAATGGTGTCTGAACCCT 392354 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | || || |||||||| || |||||||| |||||||| |||||| Sbjct 392355 CAACTTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCATG 392407 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || |||||| ||||| ||||||||||| |||| || || | || || Sbjct 392654 ACGAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCA 392713 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | ||||||||| || | || | |||||||| ||| Sbjct 392714 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGG 392773 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || |||||| | ||| ||||| | || || ||||| Sbjct 392774 ATCTTGGCCTTGACATTCTCAATAGTGTCGCTGCCTTCAACCTCGAGGGTGATGGTCTTG 392833 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || |||||||||||||| ||||| |||||| Sbjct 392834 CCAGTGAGGGTCTTCACAAAGATCTGCATG 392863 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || ||||| ||||||||||||||| | | ||| | || || Sbjct 392426 ACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGCTCAATGTGCGGCCATCCTCG 392485 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | ||| ||||| || | ||| | |||||||| || Sbjct 392486 AGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGAGGGATGCCTTCCTTATCTTGA 392545 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | || | ||||||||| | ||| || || | || || |||||| Sbjct 392546 ATCTTAGCCTTGACGTTTTCGATGGTGTCGCTGCCTTCAACTTCGAGGGTGATAGTCTTT 392605 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || |||||||| || ||||| |||||| Sbjct 392606 CCGGTAAGGGTCTTGACAAAGATCTGCATG 392635 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| ||||| ||||||||||| |||| ||| || | || || Sbjct 391970 ACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCA 392029 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| |||||||| ||||| || |||| || | |||||||| || Sbjct 392030 AGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCTTCCTTATCTTGA 392089 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | |||| | |||||||| | ||| || || | || || ||||| Sbjct 392090 ATCTT-TGCCTTGACGTTCTCGATGGTGTCTGATCCTTCAACTTCGAGGGTGATAGTCTT 392148 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | || ||||||||||| |||||| Sbjct 392149 GCCAGTCAAAGTTTTCACGAAGATCTGCATG 392179 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || || ||||| | |||||||||||| | ||| | |||||||| || ||||| Sbjct 393005 CTTACCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTT 393064 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||| | || | |||||||| | | ||| ||||| | || || ||||| || || Sbjct 393065 GGCCTTGACATTTTCAATGGTGTCTGAGCCTTCAACCTCAAGGGTGATGGTCTTGCCGGT 393124 Query 44314 GAGGGTCTTCACGAAGATTTGCATGAT 44340 || ||||| |||||||| |||||||| Sbjct 393125 AAGAGTCTTGACGAAGATCTGCATGAT 393151 >seq793 Length=17056 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || || ||||||||||| |||||||| | || | |||||||| ||| ||||| Sbjct 5317 CTTACCAGCGAAGATCAAACGTTGCTGATCCGGGGGAATGCCTTCCTTATCCTGGATCTT 5376 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||| | || | |||||||| | || || ||||| | || || ||||| || || Sbjct 5377 GGCCTTGACATTTTCGATGGTGTCAGAGGCCTCAACCTCAAGGGTGATGGTCTTGCCGGT 5436 Query 44314 GAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| |||||||| ||||| Sbjct 5437 GAGGGTCTTGACGAAGATCTGCAT 5460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359986275859980