Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq806 178 3e-39 seq394 165 2e-35 seq793 104 6e-17 >seq806 Length=689343 Score = 178 bits (196), Expect = 3e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||||||| | || || || || ||||||||||| || ||| | |||||| Sbjct 392175 CAGATCTTCGTGAAAACTTTGACTGGCAAGACTATCACCCTCGAAGTTGAAGGATCAGAC 392116 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||||||| || || ||||| || || || ||||| || Sbjct 392115 ACCATCGAGAACGTCAAGGCAAAGATTCAAGATAAGGAAGGCATTCCCCCAGACCAACAG 392056 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||||| |||||||| | || || |||| || ||| || Sbjct 392055 CGCTTGATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGTACCCTCTCCGACTACAACATC 391996 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| ||||| ||||| || Sbjct 391995 CAGAAGGAATCCACACTCCATCTCGT 391970 Score = 176 bits (194), Expect = 1e-38 Identities = 163/207 (79%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| || || || |||||||||||||| ||| || ||| Sbjct 392859 CAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAAGGCAGCGAC 392800 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| ||||| ||||| |||||||| ||||| || || ||||||||||| Sbjct 392799 ACTATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAGCAG 392740 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| ||||| |||||||| | |||||| |||| || ||| || Sbjct 392739 CGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGTACTCTTTCCGACTACAACATC 392680 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| || || ||||| ||| Sbjct 392679 CAGAAGGAATCCACGCTCCATCTCGTT 392653 Score = 165 bits (182), Expect = 2e-35 Identities = 162/208 (78%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || ||||| || ||||||||||| || ||| || ||| Sbjct 392631 CAGATCTTTGTCAAGACCCTTACCGGAAAGACTATCACCCTCGAAGTTGAAGGCAGCGAC 392572 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||| || || ||||| |||||||||||||||||| Sbjct 392571 ACCATCGAAAACGTCAAGGCTAAGATTCAAGATAAGGAAGGCATCCCTCCGGACCAGCAA 392512 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || |||||||| ||||| | || | |||||| ||| || Sbjct 392511 CGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACATTGAGCGATTACAACATC 392452 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || ||||| || || || |||| || Sbjct 392451 CAGAAGGAATCTACCCTCCA-CTTGGTT 392425 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| || |||||||| || || || | |||||| Sbjct 392403 CAGATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTTGAAGTTGAGGGTTCAGAC 392344 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| |||||||| ||||| ||||| || || || || ||||| Sbjct 392343 ACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAGCAG 392284 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| |||||||| | || || |||| || ||| | Sbjct 392283 CGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATT 392224 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 392223 CAGAAGGAATCTACCCTCCA-CTTG 392200 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || ||||||||||| || || ||| || ||| Sbjct 391947 CAGATCTTCGTCAAGACCCTTACTGGCAAGACGATCACCCTGGAAGTTGAAGGCAGCGAC 391888 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| ||||| |||||||| ||||| || || || || ||||| Sbjct 391887 ACCATCGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAG 391828 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| ||||| | || | || || ||| || Sbjct 391827 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACATTGAGTGACTACAACATC 391768 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 391767 CAGAAGGAGTCTACCCTTCA-CTTG 391744 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || || || || |||||||| ||||| ||| |||||||| Sbjct 393145 CAGATCTTCGTCAAGACTCTTACCGGCAAGACCATCACCCTTGAGGTTGAAGGCTCAGAC 393086 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || ||||| ||||| ||||||||||| ||||| Sbjct 393085 ACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCGGATCAGCAG 393026 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || || |||||||| || || Sbjct 393025 CGTCTCATCTTCGCTGGTAA 393006 >seq394 Length=505719 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || ||||| |||||||| || ||| || ||| Sbjct 8743 CAAATCTTCGTCAAGACCCTCACCGGCAAGACGATTACCCTCGAAGTCGAAGGCAGCGAC 8684 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| || ||||| ||||| || || || ||||||||| Sbjct 8683 ACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAGCAA 8624 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || ||||| |||||||| | || || ||| || ||| || Sbjct 8623 CGTCTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCAGCGACTACAACATC 8564 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| || || ||||| || Sbjct 8563 CAAAAGGAATCTACCCTTCATCTCGT 8538 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || |||||||||||||| || ||| || ||| Sbjct 9655 CAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTCGAAGGCAGCGAC 9596 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| ||||| ||||| || ||||| ||||| || || |||||| Sbjct 9595 ACTATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAGCAA 9536 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| ||||| | ||| | |||| || ||| || Sbjct 9535 CGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAACATC 9476 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || ||||| || || || | || |||||| Sbjct 9475 CAGAAGGAATCCACCCTCCACTTGGTGTTGAGA 9443 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || ||||| || |||||||||||||| || |||| ||| Sbjct 10167 CAAATCTTCGTCAAGACCCTGACGGGAAAGACCATCACCCTCGAGGTTGAGGGCTCCGAC 10108 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| ||||| || ||||| || || ||||| ||||| Sbjct 10107 ACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCGGATCAGCAG 10048 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || |||||||| ||||| | || || |||| || ||| || Sbjct 10047 CGTTTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCCGACTACAACATC 9988 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 9987 CAGAAGGAATCCACCCTTCA-CTTG 9964 Score = 149 bits (164), Expect = 2e-30 Identities = 159/206 (77%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| ||||| ||| || ||| Sbjct 9199 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAAGGCAGCGAC 9140 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| ||||| || ||||| || || || |||||||| Sbjct 9139 ACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAGCAG 9080 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||| ||||| ||| | |||||||| | || |||| |||| || ||| | Sbjct 9079 CGCTTGATCTTCGCTGGAAAGCAGTTGGAAGATGGCCGTAC-CTTGTCCGACTACAACAT 9021 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| || |||||||| || || |||| Sbjct 9020 CCAGAAGGAATCAACCCTCCA-CTTG 8996 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || |||||||| || || || | || ||| Sbjct 8971 CAGATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTTGAAGTTGAGGGTTCCGAC 8912 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||| ||||| ||||| || ||||||||| Sbjct 8911 ACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAA 8852 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || ||||||||||| || | ||| | |||| || ||| || Sbjct 8851 CGTCTCATTTTCGCCGGCAAGCAGCTCGAAGACGGCCGTACTTTGTCCGACTACAACATC 8792 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 8791 CAAAAGGAATCTACCCTCCA-CTTG 8768 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || ||||| | || || ||| |||| ||| Sbjct 9427 CAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACTTTGGAAGTCGAAGGCTCCGAC 9368 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || ||||| ||||| || || || ||||||||| Sbjct 9367 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAGCAA 9308 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| |||||||| | || || ||| || ||| || Sbjct 9307 CGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGCACCCTCAGCGACTACAACATC 9248 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 9247 CAGAAGGAGTCGACCCTCCATCTCGT 9222 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| | || || ||| |||| ||| Sbjct 9939 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTTTGGAAGTCGAAGGCTCTGAC 9880 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||| ||||| || || || ||||||||| Sbjct 9879 ACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAGCAA 9820 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || ||||| |||||||| || Sbjct 9819 CGTCTTATTTTCGCCGGTAA 9800 >seq793 Length=17056 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| ||||| || ||| ||| Sbjct 5457 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGGCCTCTGAC 5398 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| ||||| || ||||| || || ||||| |||||| Sbjct 5397 ACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCGGATCAGCAA 5338 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | |||||||| || || Sbjct 5337 CGTTTGATCTTCGCTGGTAA 5318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203716702562360