Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq394 127 2e-24 seq806 118 1e-21 >seq394 Length=505719 Score = 127 bits (140), Expect = 2e-24 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||| || || ||| |||||||| ||||| |||||||| Sbjct 9943 GCCACCGCGGAGACGGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 10002 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| || | || |||||||||||||| ||||| |||| ||||| || |||| ||| Sbjct 10003 GAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCCGGGGG 10062 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 || || ||||| ||| ||| || ||| || || | |||||| ||| Sbjct 10063 AATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCG--ATGGTGTCGGAGCCCTCA 10120 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || |||||||| ||||| ||||| || |||||| Sbjct 10121 ACCTCGAGGGTGATGGTCTTTCCCGTCAGGGTCTTGACGAAGATTTGCATG 10171 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||| || || ||||||||| ||||| |||||| | Sbjct 9204 CCGCCACGAAGACGGAGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTG 9263 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||||||||| || || || || ||||| | |||| Sbjct 9264 AGGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGA 9323 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||| ||| || ||| | | | |||||| || || Sbjct 9324 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGCCTTCGACT 9383 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || || || |||| ||||| ||||| ||||||||| Sbjct 9384 TCCAAAGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 9431 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || ||||| || || ||||| || ||||| |||||| | Sbjct 8520 CCACCGCGCAGACGAAGGACGAGATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGCTG 8579 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||||||||| || || || || ||||| | |||| Sbjct 8580 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGA 8639 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | || | || || | ||| | | |||||||| || || Sbjct 8640 ATGCCTTCCTTGT-CTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCGCTGCCTTCGAC 8698 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || ||||| || || || || ||||| ||||| || ||||| Sbjct 8699 TTCGAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 8746 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| | | ||||||| || || ||| |||||||| ||||| |||||||| Sbjct 9431 GCCACCGCGCAATCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 9490 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || |||||||||||||||||||| || || || || || || | ||| Sbjct 9491 CAAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGG 9550 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||| ||| ||| || ||| | | | ||||||||| || || Sbjct 9551 GATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCGCTGCCTTCGAC 9610 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || ||||| || || || || ||||| ||||| ||||||||| Sbjct 9611 TTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 9659 >seq806 Length=689343 Score = 118 bits (130), Expect = 1e-21 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || ||| |||||||| ||||| |||||||| Sbjct 391951 GCCACCACGGAGACGGAGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGA 392010 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| || | || || |||||||| |||||||| |||| |||||||||||| | ||| Sbjct 392011 GAGGGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGGGG 392070 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTC-GCTCGACTCC 41812 || || ||||| | | ||| | ||||| | ||| | | ||||| | || || Sbjct 392071 AATGCCTTCCTTAT-CTTGAATCTTTGCCTTGACGTTCTCGATGGTGTCTGATC-CTTCA 392128 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || | || || || || || |||| || || ||||| ||||||||| Sbjct 392129 ACTTCGAGGGTGATAGTCTTGCCAGTCAAAGTTTTCACGAAGATCTGCATG 392179 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||||||||| ||||||||||||||||| | || || ||||||||||||||||| Sbjct 392216 TCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAG 392275 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-A 41790 || || ||||| || || | ||||| | ||||||| | ||| | || || | ||| Sbjct 392276 ATGAGACGCTGCTGATCTGGGGGAATACCTTCCTTGT-CTTGAATCTTAGCCTTGACGTT 392334 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||||| ||| || || | || || || || || || || ||||| || Sbjct 392335 CTCAATGGTGTCTGAACCCTCAACTTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGAC 392394 Query 41851 GAAAATCTGCATG 41863 ||| ||||||||| Sbjct 392395 GAAGATCTGCATG 392407 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| | ||||| | || ||||||||||||||||| || Sbjct 391759 CTCCTTCTGGATGTTGTAGTCACTCAATGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 391818 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || ||||| || || | ||||| || ||||||||| ||| || |||| Sbjct 391819 GATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATT 391878 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | |||||||| || || |||| || ||||| || || || || ||||| || Sbjct 391879 CTCGATGGTGTCGCTGCCTTCAACTTCCAGGGTGATCGTCTTGCCAGTAAGGGTCTTGAC 391938 Query 41851 GAAAATCTGCATG 41863 ||| ||||||||| Sbjct 391939 GAAGATCTGCATG 391951 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||| || || || |||||||| ||||| || ||| Sbjct 392407 GCCACCGCGAAGTCGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGCT 392466 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || |||||||||||||||||||| || || || || ||||||| || Sbjct 392467 CAATGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGAGG 392526 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||| | | ||| | || || | ||| | | |||||||| || | Sbjct 392527 GATGCCTTCCTTAT-CTTGAATCTTAGCCTTGACGTTTTCGATGGTGTCGCTGCCTTCAA 392585 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || || || || || || ||||| || || ||||||||| Sbjct 392586 CTTCGAGGGTGATAGTCTTTCCGGTAAGGGTCTTGACAAAGATCTGCATG 392635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462298567928000