Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parascaris_20equorum_20[genbank_20GCA_5F000951375.1_202014-09-26] 60,399 sequences; 185,376,996 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3183 89.7 5e-13 seq50816 82.4 7e-11 >seq3183 Length=10043 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057 ||||||| | |||||||||||||||||||||||||| ||| ||||||| || || |||| Sbjct 3511 AGGTATAATGTTTTCGGGCAGCTTTGCGGCAATATTCTGGCTGAAGAAGCGAGGTGTGAT 3570 Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 | || || ||| |||||||| | || || ||||| |||| Sbjct 3571 GAAAGGTCTAACGCACAGCAACGAACTTATCTCTCGCGATGAGG 3614 >seq50816 Length=773 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||||||||| || |||| || ||||| || || |||| || ||| ||||| Sbjct 160 ATGCAGATTTTCGTAAAAACGTTGACCGGTAAAACCATAACTCTCGAGGTGGAAGCGTCC 101 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| |||||| | || |||||| ||||| | || || || ||| Sbjct 100 GACACGATTGAAAATGTCAAAGCTAAGATCCAGGACAAAGAAGGAATCCCACCAGATCAG 41 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 || ||||| || ||||| || || Sbjct 40 CAACGTCTTATCTTCGCCGGTAA 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445429851940080