Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parascaris_20equorum_20[genbank_20GCA_5F000951375.1_202014-09-26] 60,399 sequences; 185,376,996 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq60000 170 2e-37 seq325 109 7e-19 seq17945 104 3e-17 >seq60000 Length=517 Score = 170 bits (188), Expect = 2e-37 Identities = 346/508 (68%), Gaps = 7/508 (1%) Strand=Plus/Plus Query 7349 GCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTC 7408 || |||||||| ||||| || | ||| | || | || || | | || ||||| || Sbjct 3 GCACGCTCACAAGCCGTACGAAGACGTCTCAGTGATCGAGGACTTCGCGATATATCCTTG 62 Query 7409 TTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCA 7468 | |||||| || ||||| ||| ||| | || | | ||||||||| || Sbjct 63 CCAGTTTTACGCTTGAACTCATCAATGAAAAATTTAACCATACGGTCATCGAAATCCTCT 122 Query 7469 CCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA---ATG 7525 ||||||| |||||||| || || |||| || |||||||| | | |||||| || Sbjct 123 CCACCCAGATGTGTATCGCCAGCCGTCGACTTCACTTCAAACAAAGAGCCTTCAGCAATC 182 Query 7526 TTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG 7585 || | |||||| || || |||||||| || | |||||||||||| ||||| ||| Sbjct 183 GATAGGATCGAAACGTCGAAGGTACCACCGCCTAAGTCAAAAATGAGCACGTTTTGATCC 242 Query 7586 TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATA 7645 | ||||| || ||||| || |||| || || || || ||||| || || || Sbjct 243 CCACGCAACTTCTTGTCAAGACCATAGGCGAGTGCTGCGGCTGTGGGTTCGTTGATGATC 302 Query 7646 CG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATC 7704 || || ||| |||| ||| ||||| || | || || ||||| || || || || ||| Sbjct 303 CGCAACACA-TTCAAGCCGGCAATCGTGCCAGCGTCCTTCGTGGCCTGACGCTGGCTATC 361 Query 7705 GTTAAAGTAGGCCGGGACCGTTACGACCGCGTC-CGTGACTTTCTTACCGAGATACGATT 7763 |||||| || ||||| || || | || || || ||| ||| | ||||| ||| || Sbjct 362 GTTAAAATATGCCGGCACTGTGATAACGGCTTCTCGT-ACTGTACGTCCGAGGAACGCTT 420 Query 7764 CCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTT 7823 | ||| | ||||||||||| ||||| |||||| || ||||| || | | || || Sbjct 421 CGGCGGTCTCTTTCATTTTCACAAGAATCATCGACGAGATCTCCTCGGGAGTGAAAAGTC 480 Query 7824 TCGTTTCACCGTTAAAATCAACTTCAAT 7851 ||||||| || || || |||| ||| Sbjct 481 GTTTTTCACCTTTGAACTCCACTTGAAT 508 >seq325 Length=24696 Score = 109 bits (120), Expect = 7e-19 Identities = 180/260 (69%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 7056 CCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTT 7115 ||||||| || || || | || || ||||| || || ||| | || || | || || Sbjct 5544 CCTCATCAGGATTGATACTCTTGTTGAGTTCCTTGCCCGAAAAGAAGTCTGAGAGCAATT 5485 Query 7116 GTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATT 7175 || | ||| || || || || || ||||| || | ||||| || | || || |||| Sbjct 5484 TCTGCACTTTGGGAATACGGGTTGACCCACCAACAAGTACGATATCGTGCATTTGTGATT 5425 Query 7176 TATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGT 7235 | || ||||||| ||| ||||||| || || || || ||||| |||||| | | Sbjct 5424 TGTCCATCTTTGCGTCACGAAGTGCCTTCTCCACTGGGTCCATCGTCGAACGGAAGAGAT 5365 Query 7236 CCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGT 7295 | ||||| ||||||||| || || || || ||| ||||||||||||| || ||| Sbjct 5364 CAGCACACAATTCCTCAAAGCGAGCTCGAGTGATGTTCGTATAGAAATCAATTCCCTCGA 5305 Query 7296 ATAACGAATCAATTTCAATG 7315 | | ||||| || |||||| Sbjct 5304 ACAGAGAATCGATCTCAATG 5285 >seq17945 Length=2932 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| ||||| || || || ||||| || || || || || || || || |||| | Sbjct 1130 TTCTTGTCGAGTCCATAGGCAATAGCAGCTGCGGTCGGCTCGTTGATGATTCGAACAACA 1189 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || ||||| ||||| || ||||||| |||||||||||||| || | |||||| || ||| Sbjct 1190 TTGAGGCCTGCAATGGTACCCGCATCCTTCGTCGCTTGTCGCTGAGCATCGTTGAAATAG 1249 Query 7715 GCCGGGACCGTTACGACCGCGT 7736 || || || || ||||| |||| Sbjct 1250 GCAGGCACGGTAACGACAGCGT 1271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634653282675160