Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parascaris_20equorum_20[genbank_20GCA_5F000951375.1_202014-09-26] 60,399 sequences; 185,376,996 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq325 118 1e-21 seq50816 109 7e-19 seq21953 96.9 5e-15 >seq325 Length=24696 Score = 118 bits (130), Expect = 1e-21 Identities = 193/273 (71%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 196605 TTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTC 196663 |||| || |||||||| ||||| | | || | ||||| ||| |||| | || | ||| Sbjct 6810 TTCAGGTTTATGAAGGCGAACG-TGCAATGACTAAGGACAACAATCTGTTGGGCAAATTC 6868 Query 196664 GATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGAT 196723 || || | || || ||| | ||||| | |||||||| ||||| | || |||||| Sbjct 6869 GAGCTGTCTGGTATCCCACCAGCACCTCGGGGTGTTCCTCAGATCGAGGTCACTTTCGAT 6928 Query 196724 ATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAA 196783 || || || || || || | ||||| ||||| | ||||| | | ||||| | ||| Sbjct 6929 ATTGATGCTAACGGCATCTTGAACGTATCAGCTCAAGACAAATCGACCGGCAAG-CAGAA 6987 Query 196784 -AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGT 196842 |||||| || |||||||||||||| || | || ||||| || || || |||||||| Sbjct 6988 CAAGATTACAATCACCAATGACAAGGGACGTTTGTCGAAGGATGAGATCGATCGTATGGT 7047 Query 196843 TCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 || || || |||| |||| | ||| ||||| Sbjct 7048 GCAGGAAGCCGAAAGATACAAAGCAGATGACGA 7080 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 196131 TTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTT 196190 ||||||| ||||| |||| || |||||||| |||||||| | || || || || || | Sbjct 5287 TTGAGATCGATTCTCTGTTCGAGGGAATTGATTTCTATACGAACATCACTCGAGCTCGCT 5346 Query 196191 TTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTC 196250 |||| || || ||||| | || | | ||||| || || || | | ||||| Sbjct 5347 TTGAGGAATTGTGTGCTGATCTCTTCCGTTCGACGATGGACCCAGTGGAGAAGGCACTTC 5406 Query 196251 GTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCC 196310 |||||||||||||||| || || | | | || || || ||||| || || ||||||| Sbjct 5407 GTGACGCAAAGATGGACAAATCACAAATGCACGATATCGTACTTGTTGGTGGGTCAACCC 5466 Query 196311 GTATTCCGAA 196320 ||||||| || Sbjct 5467 GTATTCCCAA 5476 >seq50816 Length=773 Score = 109 bits (120), Expect = 7e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || ||||| | || || ||||| || || |||||||| || |||| Sbjct 160 ATGCAGATTTTCGTAAAAACGTTGACCGGTAAAACCATAACTCTCGAGGTGGAAGCGTCC 101 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || ||||||| ||||| || || || ||||| || ||||| |||||| Sbjct 100 GACACGATTGAAAATGTCAAAGCTAAGATCCAGGACAAAGAAGGAATCCCACCAGATCAG 41 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| ||||| || || ||||| Sbjct 40 CAACGTCTTATCTTCGCCGGTAA 18 >seq21953 Length=2392 Score = 96.9 bits (106), Expect = 5e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| | |||||||| || || || || || || ||||| |||||| | || Sbjct 751 ATGCAAATCTTCATCAAAACCCTGACCGGTAAGACAATAACACTCGAAGTTGAGGCTTCG 692 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | || || |||||||| || ||||| || ||||| ||||| ||| Sbjct 691 GATACTATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAGGGGATTCCTCCCGACCAG 632 Query 171982 CAACGACTTATTTTTGCTGGT 172002 || || || || || || ||| Sbjct 631 CAGCGTCTGATCTTCGCCGGT 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657365722111280