Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parascaris_20equorum_20[genbank_20GCA_5F000951375.1_202014-09-26] 60,399 sequences; 185,376,996 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq325 96.9 3e-14 seq60000 86.0 5e-11 >seq325 Length=24696 Score = 96.9 bits (106), Expect = 3e-14 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| |||| ||| ||||| ||||| || || || || | || || Sbjct 4180 TTCTTGTCGAGACCATAGGCAATAGCTGCAGCCGTTGGCTCGTTGATGATACGCAGGACG 4121 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || | ||| || |||||||| || || || | ||||||||||| ||||| Sbjct 4120 TTGAGGCCCGAAATCGCCCCGGCATCTTTTGTTGCCTGACGCTGTGAATCGTTGAAATAA 4061 Query 282452 GCAGGAACAGTAATAACGGCATC 282474 ||||| || |||| ||||||||| Sbjct 4060 GCAGGCACGGTAACAACGGCATC 4038 >seq60000 Length=517 Score = 86.0 bits (94), Expect = 5e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || ||||||||||| || | || || || || ||||| || || || | ||| ||| Sbjct 252 TTCTTGTCAAGACCATAGGCGAGTGCTGCGGCTGTGGGTTCGTTGATGATCCGCAACACA 311 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | || ||||| | || || || || ||||| || | || ||||||||||||| Sbjct 312 TTCAAGCCGGCAATCGTGCCAGCGTCCTTCGTGGCCTGACGCTGGCTATCGTTAAAATAT 371 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACT 282481 || || || || |||||||| ||| |||| Sbjct 372 GCCGGCACTGTGATAACGGCTTCTCGTACT 401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737665064346174