Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parascaris_20equorum_20[genbank_20GCA_5F000951375.1_202014-09-26] 60,399 sequences; 185,376,996 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq50816 116 7e-21 seq50450 93.3 8e-14 >seq50816 Length=773 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| || | ||| |||||||| || |||||||| || || || ||||| Sbjct 18 TTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCTTTGTCCTGGATCTTA 77 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| |||||||||||||| || | ||| || || | |||||| || || || ||| Sbjct 78 GCTTTGACATTTTCAATCGTGTCGGACGCTTCCACCTCGAGAGTTATGGTTTTACCGGTC 137 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 ||||| ||||| || ||||||||| Sbjct 138 AACGTTTTTACGAAAATCTGCATT 161 >seq50450 Length=778 Score = 93.3 bits (102), Expect = 8e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 82710 TCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAA 82769 ||||||||||||||||| || || |||||||| || ||||| | || || |||||| Sbjct 610 TCCTTATCTTGAATCTTGGCCTTCACATTTTCGATAGTATCGGACGCCTCCACCTCCAAA 669 Query 82770 GTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||||||||||| |||||| || || || ||||| Sbjct 670 GTAATTGTCTTGCCTGTCAGCGTCTTCACGAAAATTTGCAT 710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981067401055261