Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parascaris_20equorum_20[genbank_20GCA_5F000951375.1_202014-09-26] 60,399 sequences; 185,376,996 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq60000 179 1e-39 seq50816 125 2e-23 seq325 84.2 7e-11 >seq60000 Length=517 Score = 179 bits (198), Expect = 1e-39 Identities = 343/499 (69%), Gaps = 15/499 (3%) Strand=Plus/Minus Query 349508 AAAGGTGAACAAAAACAATTTTTAC--CCGAAGAAATTTCATCAATGGTTTTAGTTAAAA 349565 ||||||||| || || |||| || |||| || || || || ||| || | || |||| Sbjct 493 AAAGGTGAAAAACGAC--TTTTCACTCCCGAGGAGATCTCGTCGATGATTCTTGTGAAAA 436 Query 349566 TGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTAC 349625 |||| || | || ||||| | | || |||||| || || ||||| || || | Sbjct 435 TGAAAGAGACCGCCGAAGCGTTCCTCGGACGTACAGTACGAGAAGCCGTTATCACAGTGC 376 Query 349626 CAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGT 349685 | || |||||||| ||| ||||||| || || || || ||||||| ||||| || | Sbjct 375 CGGCATATTTTAACGATAGCCAGCGTCAGGCCACGAAGGACGCTGGCACGATTGCCGGCT 316 Query 349686 TAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATA 349745 | ||||| | | || || || |||||||| || |||||| | || ||||| ||||| | Sbjct 315 TGAATGTGTTGCGGATCATCAACGAACCCACAGCCGCAGCACTCGCCTATGGTCTTGACA 256 Query 349746 AAA---TGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | | || ||| || |||| | || |||||||| ||||| |||||||| || | Sbjct 255 AGAAGTTGCGTGGG---GATCAAAACGTGCTCATTTTTGACTTAGGCGGTGGTACCTTCG 199 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTT---TGAAGTTAAAGCAACTGCTGGTG 349859 | || || | ||| | ||| || || ||| |||||| || | || ||||| | Sbjct 198 ACGTTTCGATCCTATCGATTGCTGAAGGCTCTTTGTTTGAAGTGAAGTCGACGGCTGGCG 139 Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAAT 349919 |||||||||| |||||||| ||||| ||| | ||| | ||| ||| || | || | Sbjct 138 ATACACATCTGGGTGGAGAGGATTTCGATGACCGTATGGTTAAATTTTTCATTGATGAGT 79 Query 349920 TTAAGCGTCAAGCTAAAATTGATAT-TGGAGATAATCCTAGAGCAATGCGTCGCCTAAGA 349978 | |||||| || || | ||||| | | || | |||| || || || | || || | Sbjct 78 TCAAGCGTAAAACTGGCAAGGATATATCGCGA-AGTCCTCGATCACTGAGACGTCTTCGT 20 Query 349979 ACTGCGTGTGAACGTGCTA 349997 || || ||||| ||||||| Sbjct 19 ACGGCTTGTGAGCGTGCTA 1 >seq50816 Length=773 Score = 125 bits (138), Expect = 2e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || || ||||| |||||||||||||| || || ||||||||||| ||||| || ||| Sbjct 18 TTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCTTTGTCCTGGATCTTA 77 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||||| ||||| ||||||| || || | ||| || || || || | || || ||||| Sbjct 78 GCTTTGACATTTTCAATCGTGTCGGACGCTTCCACCTCGAGAGTTATGGTTTTACCGGTC 137 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 | |||||||| |||||||||||| Sbjct 138 AACGTTTTTACGAAAATCTGCATT 161 >seq325 Length=24696 Score = 84.2 bits (92), Expect = 7e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 349765 aaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGA 349824 |||| | |||||||| ||| | ||||| |||||||| ||||| ||| | | || | || Sbjct 4333 AAATGTGCTTATTTTCGATCTCGGTGGAGGTACTTTCGATGTTTCAATCTTGACGATCGA 4392 Query 349825 AGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGG 349875 ||| || || |||||||||||| | || ||||| || || ||||| || || Sbjct 4393 AGACGGCATCTTTGAAGTTAAATCGACAGCTGGAGACACCCATCTCGGAGG 4443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514081801915397