Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parascaris_20equorum_20[genbank_20GCA_5F000951375.1_202014-09-26]
60,399 sequences; 185,376,996 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq60000 179 1e-39
seq50816 125 2e-23
seq325 84.2 7e-11
>seq60000
Length=517
Score = 179 bits (198), Expect = 1e-39
Identities = 343/499 (69%), Gaps = 15/499 (3%)
Strand=Plus/Minus
Query 349508 AAAGGTGAACAAAAACAATTTTTAC--CCGAAGAAATTTCATCAATGGTTTTAGTTAAAA 349565
||||||||| || || |||| || |||| || || || || ||| || | || ||||
Sbjct 493 AAAGGTGAAAAACGAC--TTTTCACTCCCGAGGAGATCTCGTCGATGATTCTTGTGAAAA 436
Query 349566 TGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTAC 349625
|||| || | || ||||| | | || |||||| || || ||||| || || |
Sbjct 435 TGAAAGAGACCGCCGAAGCGTTCCTCGGACGTACAGTACGAGAAGCCGTTATCACAGTGC 376
Query 349626 CAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGT 349685
| || |||||||| ||| ||||||| || || || || ||||||| ||||| || |
Sbjct 375 CGGCATATTTTAACGATAGCCAGCGTCAGGCCACGAAGGACGCTGGCACGATTGCCGGCT 316
Query 349686 TAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATA 349745
| ||||| | | || || || |||||||| || |||||| | || ||||| ||||| |
Sbjct 315 TGAATGTGTTGCGGATCATCAACGAACCCACAGCCGCAGCACTCGCCTATGGTCTTGACA 256
Query 349746 AAA---TGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802
| | || ||| || |||| | || |||||||| ||||| |||||||| || |
Sbjct 255 AGAAGTTGCGTGGG---GATCAAAACGTGCTCATTTTTGACTTAGGCGGTGGTACCTTCG 199
Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTT---TGAAGTTAAAGCAACTGCTGGTG 349859
| || || | ||| | ||| || || ||| |||||| || | || ||||| |
Sbjct 198 ACGTTTCGATCCTATCGATTGCTGAAGGCTCTTTGTTTGAAGTGAAGTCGACGGCTGGCG 139
Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAAT 349919
|||||||||| |||||||| ||||| ||| | ||| | ||| ||| || | || |
Sbjct 138 ATACACATCTGGGTGGAGAGGATTTCGATGACCGTATGGTTAAATTTTTCATTGATGAGT 79
Query 349920 TTAAGCGTCAAGCTAAAATTGATAT-TGGAGATAATCCTAGAGCAATGCGTCGCCTAAGA 349978
| |||||| || || | ||||| | | || | |||| || || || | || || |
Sbjct 78 TCAAGCGTAAAACTGGCAAGGATATATCGCGA-AGTCCTCGATCACTGAGACGTCTTCGT 20
Query 349979 ACTGCGTGTGAACGTGCTA 349997
|| || ||||| |||||||
Sbjct 19 ACGGCTTGTGAGCGTGCTA 1
>seq50816
Length=773
Score = 125 bits (138), Expect = 2e-23
Identities = 114/144 (79%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| || || ||||| |||||||||||||| || || ||||||||||| ||||| || |||
Sbjct 18 TTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCTTTGTCCTGGATCTTA 77
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
||||| ||||| ||||||| || || | ||| || || || || | || || |||||
Sbjct 78 GCTTTGACATTTTCAATCGTGTCGGACGCTTCCACCTCGAGAGTTATGGTTTTACCGGTC 137
Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738
| |||||||| ||||||||||||
Sbjct 138 AACGTTTTTACGAAAATCTGCATT 161
>seq325
Length=24696
Score = 84.2 bits (92), Expect = 7e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 349765 aaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGA 349824
|||| | |||||||| ||| | ||||| |||||||| ||||| ||| | | || | ||
Sbjct 4333 AAATGTGCTTATTTTCGATCTCGGTGGAGGTACTTTCGATGTTTCAATCTTGACGATCGA 4392
Query 349825 AGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGG 349875
||| || || |||||||||||| | || ||||| || || ||||| || ||
Sbjct 4393 AGACGGCATCTTTGAAGTTAAATCGACAGCTGGAGACACCCATCTCGGAGG 4443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1514081801915397
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |