Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parascaris_20equorum_20[genbank_20GCA_5F000951375.1_202014-09-26] 60,399 sequences; 185,376,996 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq50816 131 4e-25 seq21953 89.7 1e-12 >seq50816 Length=773 Score = 131 bits (144), Expect = 4e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| | || || ||||| || || |||||||||||| || ||| Sbjct 157 CAGATTTTCGTAAAAACGTTGACCGGTAAAACCATAACTCTCGAGGTGGAAGCGTCCGAC 98 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||| |||||||||||||||||||| || || |||||| Sbjct 97 ACGATTGAAAATGTCAAAGCTAAGATCCAGGACAAAGAAGGAATCCCACCAGATCAGCAA 38 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || |||||||||||||| || Sbjct 37 CGTCTTATCTTCGCCGGTAA 18 >seq21953 Length=2392 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||| | ||||| || || || || || || || ||||| || || || || Sbjct 748 CAAATCTTCATCAAAACCCTGACCGGTAAGACAATAACACTCGAAGTTGAGGCTTCGGAT 689 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||||||||| || || || ||||| |||||||| Sbjct 688 ACTATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAGGGGATTCCTCCCGACCAGCAG 629 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||||||||| Sbjct 628 CGTCTGATCTTCGCCGG 612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202799677940406